Team:Paris/Modeling/plot

From 2008.igem.org

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<div class=Section1>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>% Main function for the simulations</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>clear, close </span><span lang=EN-GB style='font-size:
 +
10.0pt;font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>all</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>;</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
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lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%% File to use to obtain :</span><span lang=EN-GB
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>1 - The
 +
ouput of the system</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>2 - A
 +
visualization of that output</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>  </span>3 - The
 +
value of a criteria describing whether there are oscillations</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
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mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>tmax=200;</span><span lang=EN-GB style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>t=[0:0.1:tmax];</span><span lang=EN-GB
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%Prop=0.3;</span><span lang=EN-GB style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>V0=[1;0;0;0;0;0;0;0;0];</span><span lang=EN-GB
 +
style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;mso-ansi-language:
 +
EN-GB'>%Initial state</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>V=simul(t,V0);</span><span lang=EN-GB
 +
style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;mso-ansi-language:
 +
EN-GB'>%Numerical simulation of the system</span><span lang=EN-GB
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>% Visualization of the output</span><span lang=EN-GB
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>Z=[V(:,1),V(:,5),V(:,6),V(:,9)];</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>figure;</span><span lang=EN-GB style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>plot(t,V');</span><span lang=EN-GB style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>legend(</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FlhDC'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FliA'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FliL'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FlgA'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'FlhB'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'AHL
 +
interieur'</span><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:black;mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:
 +
10.0pt;font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'AHL
 +
ext'</span><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:black;mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:
 +
10.0pt;font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'mTetR'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'TetR'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>);</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>%legend('FlhDC','FlhB','AHL int','TetR');</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
style='font-size:10.0pt;font-family:"Courier New";color:forestgreen'>% <span
 +
class=GramE>xlabel(</span>'Time');</span><span style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
style='font-size:10.0pt;font-family:"Courier New";color:forestgreen'>% <span
 +
class=GramE>ylabel(</span>'Concentrations')</span><span style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal><o:p>&nbsp;</o:p></p>
 +
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|}<br style="clear:both" />
|}<br style="clear:both" />

Revision as of 17:27, 6 August 2008

% Main function for the simulations

% Main function for the simulations

clear, close all;

%% File to use to obtain :

% 1 - The ouput of the system

% 2 - A visualization of that output

% 3 - The value of a criteria describing whether there are oscillations

tmax=200;

t=[0:0.1:tmax];

%Prop=0.3;

V0=[1;0;0;0;0;0;0;0;0];%Initial state

V=simul(t,V0);%Numerical simulation of the system

% Visualization of the output

Z=[V(:,1),V(:,5),V(:,6),V(:,9)];

figure;

plot(t,V');

legend('FlhDC','FliA','FliL','FlgA','FlhB','AHL interieur','AHL ext','mTetR','TetR');

%legend('FlhDC','FlhB','AHL int','TetR');

% xlabel('Time');

% ylabel('Concentrations')

 
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