Team:Paris/Modeling/Roadmap

From 2008.igem.org

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* optimization of the links in a bio process
* optimization of the links in a bio process
* new way to see modeling (stochastic...)
* new way to see modeling (stochastic...)
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* new way to model noise
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* using the noise?
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Revision as of 10:42, 8 August 2008

Contents

Calendar

July

  • 07/31 - Have a full bibliography ⇒ DONE

August

  • 06/07 - First model of the FIFO temporal order, of the backward control inducing the oscillations ⇒ DONE
  • 08/07 - Model the synchronization between cells, using Biocham
  • 08/15 - Summary about the ODE method, Space introduction into models (AC, Delaunay)
  • 08/22 - Feedback: list missing things (parameters), Optimization, Robustness analysis

September

  • 09/22- Checkpoint meeting

October

  • 10/15 - Scheduled wiki ending (2 weeks before the real ending to finish details)
  • 10/31 - Official wiki ending (date to be checked)

Todo

  • Continue the previous model
    • Synchronyzation
    • Estimation of the FIFO processes
    • Stochastic modeling (Gilespie)
  • Test the robustness
    • repressilator
    • comparison
  • Enhance the system
    • Better FIFO behaviour
    • Other interactions to increase the robustness

Bonus ideas

  • optimization of the links in a bio process
  • new way to see modeling (stochastic...)
  • new way to model noise
  • using the noise?

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