Team:BCCS-Bristol/Calendar-Notebook/21 July 2008

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Revision as of 12:01, 8 August 2008

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OD measurement

The OD of both strains was measured over a day so that we would know whether the bacteria were in their log phase in any experiments requiring innoculation of bacteria.

A, B and C show 100, 500 and 200µl innoculations respectively.

Time (minutes)				OD₆₀₀ (1:5 diluted)
		MG1655				MC1000
	A	B	C		A	B	C
0	0.0016	0.0042	0.017		0.0016	0.0044	0.0174
60	0.008	0.013	0.073		0.006	0.017	0.068
80	0.011	0.052	0.109		0.009	0.046	0.123
100	0.019	0.059	0.142		0.017	0.067	0.167
120	0.029	0.076	0.169		0.024	0.083	0.183
140	0.039	0.095	0.213		0.039	0.144	0.226
160	0.063	0.136	0.26		0.053	0.147	0.275
180	0.074	0.166	0.276		0.069	0.186	0.298
200	0.105	0.207	0.301		0.089	0.22	0.316
220	0.134	0.25	0.355		0.116	0.268	0.331
240	0.178	0.276	0.386		0.151	0.293	0.341
260	0.233	0.329	0.419		0.198	0.325	0.372
280	0.239	0.334	0.435		0.203	0.326	0.375
300	0.263	0.363	0.473		0.238	0.34	0.388
320	0.296	0.391	0.491		0.27	0.364	0.412
340	0.319	0.425	0.511		0.29	0.378	0.429
360	0.32	0.435	0.512		0.294	0.382	0.432
380	0.392	0.542	0.514		0.311	0.434	0.438
400	0.435	0.549	0.588		0.348	0.457	0.497
420	0.47	0.52	0.487		0.382	0.462	0.504
440	0.483	0.586	0.633		0.477	0.437	0.516
460	0.498	0.482	0.629		0.411	0.484	0.517
480	0.574	0.643	0.721		0.451	0.516	0.524
500	0.607	0.66	0.73		0.455	0.514	0.515
520	0.65	0.673	0.723		0.453	0.522	0.523

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Swimming agar assay

Chemotaxis experiment for MG1655 and MC1000 showed no real difference between the control (water) and the aspartate. This may have been due to higher agar concentration caused by an unusually large water loss in autoclaving, causing high concentrations of agar. The experiment was repeated today.

BioBrick Transformation

The transformation of bacteria with BioBrick from paper was started. Therefore, a hole was punched out and put in TE buffer (below) following protocol on iGEM sheet.

Miscellaneous

DMSO stocks of E. coli MC1000 and MG1655 were made as back up in the -80^oC freezer.

@@ Line 97: / Line 97: @@
 ==Swimming agar assay==
-Chemotaxis experiment for MG1655 showed no real difference btween the control (water) and the aspartate. may have been due to higher agar concentration caused by an unusually large water loss in autoclaving, causing high concentrations of agar.
+Chemotaxis experiment for MG1655 and MC1000 showed no real difference between the control (water) and the aspartate. This may have been due to higher agar concentration caused by an unusually large water loss in autoclaving, causing high concentrations of agar.
+The experiment was repeated today.
-Started on the transformation of bacteria with biobrick from paper, punched out hole and put in TE buffer (below) following protocol on igem sheet.
+==BioBrick Transformation==
-Chemotaxis experiment with 20% aspartate repeated.
+The transformation of bacteria with BioBrick from paper was started. Therefore,  a hole was punched out and put in TE buffer (below) following protocol on iGEM sheet.
-DMSO stocks of master cultures made as back up in the -80 <sup>o</sup> C freezer.
+==Miscellaneous==
+DMSO stocks of ''E. coli'' MC1000 and MG1655 were made as back up in the -80<sup>o</sup>C freezer.