Team:BCCS-Bristol/Notebook

From 2008.igem.org

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===Progress Reports===
===Progress Reports===
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* [[Team:BCCS-Bristol/Modeling-Progress#16th_-_23rd_July|'''16th - 23rd July''']]
 +
** Implemented run & tumble motion
 +
** With/without chemotaxis
 +
** Implemented interactions between objects (bacteria and particles)
 +
* [[Team:BCCS-Bristol/Modeling-Progress#24th_-_30th_July|'''24th - 30th July''']]
 +
** Adapted gamma distribution for tumble angle
 +
** Added trace to particles, and to the mean position of the bacteria
 +
** Changed run length calculation heuristic
 +
* [[Team:BCCS-Bristol/Modeling-Progress#31st_July_-_5th_August|'''31st July - 5th August''']]
 +
** Implemented wrapping boundaries
 +
** Written a class that allows parameters to be altered whilst the program is running
==Lab Results==
==Lab Results==

Revision as of 20:10, 12 August 2008

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BCCS-Notebook-Header 01.jpg BCCS-Notebook-Header 02.jpg BCCS-Notebook-Header 03.jpg


Contents

Lab Notebook

This section holds our team lab notebook which can be accessed by date. Click on any of the red dates to see what we got up to.

July
MTWTFSS
  [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/1_July_2008 1] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/2_July_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/3_July_2008&action=edit 3] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/4_July_2008 4] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/5_July_2008&action=edit 5] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/6_July_2008&action=edit 6]
[http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/7_July_2008 7] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/8_July_2008 8] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/9_July_2008 9] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/10_July_2008 10] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/11_July_2008 11] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/12_July_2008 12] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/13_July_2008&action=edit 13]
[http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/14_July_2008 14] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/15_July_2008 15] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/16_July_2008 16] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/17_July_2008 17] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/18_July_2008 18] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/19_July_2008 19] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/20_July_2008 20]
[http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/21_July_2008 21] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/22_July_2008 22] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/23_July_2008 23] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/24_July_2008 24] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/25_July_2008 25] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/26_July_2008 26] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/27_July_2008 27]
[http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/28_July_2008 28] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/29_July_2008 29] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/30_July_2008 30] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/31_July_2008 31]
August
MTWTFSS
        [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/1_August_2008&action=edit 1] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/2_August_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/3_August_2008&action=edit 3]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/4_August_2008&action=edit 4] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/5_August_2008&action=edit 5] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/6_August_2008 6] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/7_August_2008&action=edit 7] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/8_August_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/9_August_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/10_August_2008&action=edit 10]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/11_August_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/12_August_2008&action=edit 12] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/13_August_2008 13] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/14_August_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/15_August_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/16_August_2008&action=edit 16] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/17_August_2008&action=edit 17]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/18_August_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/19_August_2008&action=edit 19] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/20_August_2008 20] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/21_August_2008&action=edit 21] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/22_August_2008&action=edit 22] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/23_August_2008&action=edit 23] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/24_August_2008&action=edit 24]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/25_August_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/26_August_2008&action=edit 26] [http://2008.igem.org/Team:BCCS-Bristol/Calendar-Notebook/27_August_2008 27] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/28_August_2008&action=edit 28] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/29_August_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/30_August_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/31_August_2008&action=edit 31]
September
MTWTFSS
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/1_September_2008&action=edit 1] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/2_September_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/3_September_2008&action=edit 3] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/4_September_2008&action=edit 4] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/5_September_2008&action=edit 5] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/6_September_2008&action=edit 6] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/7_September_2008&action=edit 7]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/8_September_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/9_September_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/10_September_2008&action=edit 10] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/11_September_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/12_September_2008&action=edit 12] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/13_September_2008&action=edit 13] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/14_September_2008&action=edit 14]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/15_September_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/16_September_2008&action=edit 16] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/17_September_2008&action=edit 17] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/18_September_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/19_September_2008&action=edit 19] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/20_September_2008&action=edit 20] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/21_September_2008&action=edit 21]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/22_September_2008&action=edit 22] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/23_September_2008&action=edit 23] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/24_September_2008&action=edit 24] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/25_September_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/26_September_2008&action=edit 26] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/27_September_2008&action=edit 27] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/28_September_2008&action=edit 28]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/29_September_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/30_September_2008&action=edit 30]
October
MTWTFSS
    [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/1_October_2008&action=edit 1] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/2_October_2008&action=edit 2] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/3_October_2008&action=edit 3] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/4_October_2008&action=edit 4] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/5_October_2008&action=edit 5]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/6_October_2008&action=edit 6] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/7_October_2008&action=edit 7] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/8_October_2008&action=edit 8] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/9_October_2008&action=edit 9] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/10_October_2008&action=edit 10] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/11_October_2008&action=edit 11] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/12_October_2008&action=edit 12]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/13_October_2008&action=edit 13] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/14_October_2008&action=edit 14] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/15_October_2008&action=edit 15] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/16_October_2008&action=edit 16] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/17_October_2008&action=edit 17] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/18_October_2008&action=edit 18] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/19_October_2008&action=edit 19]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/20_October_2008&action=edit 20] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/21_October_2008&action=edit 21] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/22_October_2008&action=edit 22] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/23_October_2008&action=edit 23] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/24_October_2008&action=edit 24] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/25_October_2008&action=edit 25] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/26_October_2008&action=edit 26]
[http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/27_October_2008&action=edit 27] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/28_October_2008&action=edit 28] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/29_October_2008&action=edit 29] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/30_October_2008&action=edit 30] [http://2008.igem.org/wiki/index.php?title=Team:BCCS-Bristol/Calendar-Notebook/31_October_2008&action=edit 31]

Protocols

Agarose Gel Electrophoresis

Progress Reports

  • 16th - 23rd July
    • Implemented run & tumble motion
    • With/without chemotaxis
    • Implemented interactions between objects (bacteria and particles)
  • 24th - 30th July
    • Adapted gamma distribution for tumble angle
    • Added trace to particles, and to the mean position of the bacteria
    • Changed run length calculation heuristic
  • 31st July - 5th August
    • Implemented wrapping boundaries
    • Written a class that allows parameters to be altered whilst the program is running

Lab Results

Any results will be placed here.

Wet Lab Photo Album

BCCS-WetLabPhotos 01.JPG BCCS-WetLabPhotos 02.JPG BCCS-WetLabPhotos 03.JPG BCCS-WetLabPhotos 04.JPG


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