Team:Chiba/jk/β/weak 1

From 2008.igem.org

(Difference between revisions)
Line 1: Line 1:
-
>[[Team:Chiba/jk/γ|出力班]]
+
>[[Team:Chiba/jk/β|送受信班]]
==Week 1==
==Week 1==
 +
===17 August, 2008===
 +
:'''[[Team:Chiba/protocol/transformation|Transformation]]'''
 +
:competent cells : XL10G
 +
::*BBa_R0040(2008) [http://partsregistry.org/Part:BBa_R0040] -> No colonies on plates
 +
::*BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070] -> No colonies on plates
 +
::*BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates
 +
::*BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] -> No colonies on plates
 +
::*BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] -> No colonies on plates
 +
::*BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079] -> No colonies on plates
-
==17,August 2008==
+
===18 August, 2008===
-
<br>PCR
+
:'''[[Team:Chiba/protocol/PCR|PCR]]'''
-
<br>BBa_E0430①
+
::*BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070]
-
<br>BBa_E0420②
+
::*BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076]
-
<br>BBa_J06702③
+
::*BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077]
-
<br>BBa_S01416④
+
::*BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078]
-
<br>BBa_I73003⑤
+
::*BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079]
-
<br>BBa_I73004⑥
+
::*BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control
-
<br>BBa_I730026⑦
+
 
-
<br>BBa_I763002⑧
+
 
-
<table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000">
+
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">DNA Template</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dNTP mix</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Foward Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>Reverse Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>DNA polymerase</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>Thermopol Buffer</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>68</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>100μL</td>
 +
</tr>
 +
</table>
 +
 
 +
 
 +
:95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃
 +
 
 +
 
 +
 
 +
:--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
 +
 
 +
 
 +
{|align="justify"
 +
|[[Image:Chiba-0818.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
 
 +
:From left;
 +
::*BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070] ->None
 +
::*BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] ->None
 +
::*BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] ->None
 +
::*BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] ->None
 +
::*BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079] ->None
 +
::*BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control ->OK
 +
|}
 +
 
 +
 
 +
 
 +
 
 +
:'''[[Team:Chiba/protocol/transformation|Transformation]]'''
 +
competent cells : XL10G
 +
 
 +
::*BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
 +
::*BBa_C0076(2006) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates(19/8)
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]
 +
 
 +
 
 +
:--->(20/8)[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]
 +
 
 +
===19 August, 2008===
 +
:'''[[Team:Chiba/protocol/PCR|PCR]]'''
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_S3154(2007) [http://partsregistry.org/Part:BBa_S3154]
 +
::*BBa_S3154(2006) [http://partsregistry.org/Part:BBa_S3154]
 +
::*BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control
 +
 
 +
 
 +
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">DNA Template</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dNTP mix</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Foward Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>Reverse Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>DNA polymerase VENT</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>Thermopol Buffer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>28</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>50μL</td>
 +
</tr>
 +
</table>
 +
 
 +
 
 +
:95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃
 +
 
 +
 
 +
 
 +
:--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
 +
{|align="justify"
 +
|[[Image:Chiba-0819.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
 
 +
:From left;
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] ->None
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] ->None
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] ->None
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] ->None
 +
::*BBa_S3154(2007) [http://partsregistry.org/Part:BBa_S3154] ->None
 +
::*BBa_S3154(2006) [http://partsregistry.org/Part:BBa_S3154] ->None
 +
::*BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control  ->OK
 +
|}
 +
 
 +
 
 +
 
 +
===20 August, 2008===
 +
:(18/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]'''
 +
::*BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]
 +
 
 +
 
 +
:--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
 +
{|align="justify"
 +
|[[Image:Chiba-0820-3.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
 
 +
:From left;
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> None
 +
|}
 +
 
 +
 
 +
 
 +
{|align="justify"
 +
|[[Image:Chiba-0820-4.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>4</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>24μL</td>
 +
</tr>
 +
</table>
 +
 
 +
:From left;
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> OK
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
 +
::*BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070] -> OK
 +
::*BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070] -> OK
 +
|}
 +
 
 +
 
 +
 
 +
 
 +
{|align="justify"
 +
|[[Image:Chiba-0820.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
 
 +
:From left;<br>
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK<br>
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK<br>
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK<br>
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK<br>
 +
|}
 +
 
 +
 
 +
--->'''[[Team:Chiba/protocol/digestion|Digestion test]]'''
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]
 +
 
 +
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
<tr>
<tr>
<td width="257">Sample No</td>
<td width="257">Sample No</td>
-
<td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td>
+
<td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td>6</td><td>7</td><td>8</td>
</tr>
</tr>
<tr>
<tr>
-
<td>DNA tamplate</td>
+
<td>BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]</td>
-
<td>1</td><td>1</td><td>1</td><td>1</td>><td>1</td><td>1</td><td>1</td><td>1</td>
+
<td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td>
</tr>
</tr>
<tr>
<tr>
-
<td>FW primer</td>
+
<td>BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]</td>
-
<td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td>
+
<td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td>
</tr>
</tr>
<tr>
<tr>
-
<td>VR primer</td>
+
<td>BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]</td>
-
<td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td>
+
<td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td>
</tr>
</tr>
<tr>
<tr>
-
<td>dNTPmix</td>
+
<td>BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]</td>
-
<td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td>
+
<td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>3</td>
</tr>
</tr>
<tr>
<tr>
-
<td>thermo pol buffer</td>
+
<td>EcoRⅠ</td>
-
<td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td>
+
<td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td>
</tr>
</tr>
<tr>
<tr>
-
<td>DNA pol(VENT)</td>
+
<td>PstⅠ</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td>
 +
</tr>
 +
<tr>
 +
<td>Buffer EcoRⅠ</td>
 +
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td>
 +
</tr>
 +
<tr>
 +
<td>BSA</td>
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td>
<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td>
</tr>
</tr>
<tr>
<tr>
<td>dH2O</td>
<td>dH2O</td>
-
<td>68</td><td>68</td><td>68</td><td>68</td><td>68</td><td>68</td><td>68</td><td>68</td>
+
<td>4.9</td><td>4.9</td><td>4.9</td><td>4.9</td><td>4.8</td><td>4.8</td><td>4.8</td><td>4.8</td>
</tr>
</tr>
<tr>
<tr>
<td>TOTAL</td>
<td>TOTAL</td>
-
<td>100</td><td>100</td><td>100</td><td>100</td><td>100</td><td>100</td><td>100</td><td>100</td>
+
<td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td>
</tr>
</tr>
</table>
</table>
Line 55: Line 365:
-
==20,August 2008==
+
:--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
-
<br>TRANSFORMATION
+
{|align="justify"
-
<br>BBa_J52008(Luciferase Renilla)-->colony
+
|[[Image:Chiba-0820-2.JPG]]
-
<br>BBa_I712019(Luciferase Fire fly)-->no colony
+
|
-
<br>BBa_J332002(LacZ)-->colony
+
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
-
<br>BBa_E2030(Venus YFP)-->not so good
+
<tr>
-
<br>YFP(P-GEX)-->colony
+
<td width="257">Sample DNA</td>
-
<br>BBa_F2620-->colony
+
<td>3</td>
-
<br>BBa_T9002-->colony
+
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
:From left;
 +
:(Single Digestion 1~4)
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK
 +
:(Double Digestion 1~4)
 +
::*BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK
 +
::*BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK
 +
::*BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK
 +
::*BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK
 +
|}
 +
===21 August, 2008===
 +
:(20/8)--->'''[[Team:Chiba/protocol/PCR|PCR]]'''
 +
::*BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]
-
==21,August 2008==
+
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">DNA Template</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dNTP mix</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Foward Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>Reverse Primer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>DNA polymerase TAQ</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>Thermopol Buffer</td>
 +
<td>5</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>28</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>50μL</td>
 +
</tr>
 +
</table>
-
<br>TRANSFORMATION
 
-
<br>BBa_J32007(Lux CDABE)-->no colony
 
-
<br>BBa_B0034(RBS)-->colony
 
 +
:95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃
-
== 22,August 2008 ==
 
-
<br>MINI PREP
 
-
<br>BBa_J52008(Luciferase)
 
-
<br>BBa_F2620
 
-
<br>BBa_T9002
 
-
<br>BBa_J33202(LacZ)
 
-
<br>PUC19
 
-
<br>PGEX VENUS YFP(GST fusion)
 
-
<br>
 
-
<br>TRANSFORMATION
 
-
<br>PGEX VENUS YFP(GST fusion)
 
 +
:--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
 +
{|align="justify"
 +
|[[Image:Chiba-0821.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample DNA</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>7</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12μL</td>
 +
</tr>
 +
</table>
 +
 +
:From left;
 +
::*BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
 +
::*BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> None
 +
::*BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
 +
::*BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070] -> OK
 +
::*BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070] -> OK
 +
|}
 +
 +
 +
 +
:'''[[Team:Chiba/protocol/transformation|Transformation]]'''
 +
:competent cells : XL10G
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
 +
 +
 +
 +
 +
--->(23/8)'''[[Team:Chiba/protocol/digestion|Digestion]]'''
 +
 +
 +
 +
===22 August, 2008===
 +
:'''[[Team:Chiba/protocol/transformation|Transformation]]'''
 +
:competent cells : XL10G
 +
::*BBa_J13002(2007) [http://partsregistry.org/Part:BBa_J13002]
 +
::*BBa_J13002(2006) [http://partsregistry.org/Part:BBa_J13002]
 +
::*BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]
 +
::*BBa_J04500(2006) [http://partsregistry.org/Part:BBa_J04500]
 +
:(Locate & 2 Punch ~iyama ver.~)
 +
::*BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates
 +
::*BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] -> No colonies on plates
 +
::*BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] -> No colonies on plates
 +
::*BBa_J04500(2008) [http://partsregistry.org/Part:BBa_J04500] -> No colonies on plates
 +
 +
 +
 +
--->(24/8)'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]'''
 +
 +
===23 August, 2008===
 +
:(21/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]'''
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
 +
 +
 +
:--->'''[[Team:Chiba/protocol/digestion|Digestion test]]'''
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]
 +
 +
 +
:<table width="500" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="270">Sample No</td>
 +
<td> 1</td><td> 2</td><td> 3</td><td> 4</td><td> 5</td><td> 6</td><td> 7</td><td> 8</td><td> 9</td><td>10</td><td>11</td><td>12</td><td>13</td><td>14</td><td>15</td><td>16</td><td>17</td><td>18</td><td>19</td><td>20</td><td>21</td>
 +
</tr><tr>
 +
<td>BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]</td>
 +
<td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td>
 +
</tr>
 +
<tr>
 +
<td>BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]</td>
 +
<td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td>
 +
</tr>
 +
<tr>
 +
<td>BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]</td>
 +
<td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td>
 +
</tr>
 +
<tr>
 +
<td>BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]</td>
 +
<td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td>
 +
</tr>
 +
<tr>
 +
<tr>
 +
<td>BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td></tr>
 +
<tr>
 +
<td>BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td></tr>
 +
<tr>
 +
<td>BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>1</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>3</td></tr>
 +
<tr>
 +
<td>EcoRⅠ</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td>
 +
</tr>
 +
<tr>
 +
<td>PstⅠ</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td>
 +
</tr>
 +
<tr>
 +
<td>Buffer EcoRⅠ</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>0.9</td><td>0.9</td><td>0.9</td><td>0.9</td><td>0.9</td><td>0.9</td><td>0.9</td><td>0.8</td><td>0.8</td><td>0.8</td><td>0.8</td><td>0.8</td><td>0.8</td><td>0.8</td>
 +
</tr>
 +
<tr>
 +
<td>BSA</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>3</td><td>3</td><td>3</td><td>3</td><td>3</td><td>3</td><td>1</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td>
 +
</tr>
 +
</table>
 +
 +
 +
 +
:--->[[Team:Chiba/protocol/gelcheck|Gel Check]]
 +
{|align="justify"
 +
|[[Image:Chiba-0823-1.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample No</td>
 +
<td>1~6</td><td>7</td>
 +
</tr>
 +
<tr>
 +
<td>Sample DNA</td>
 +
<td>3</td><td>1</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>1</td><td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>2</td><td>4</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>6</td><td>6</td>
 +
</tr>
 +
</table>
 +
:From left; Sanple No. 1~7
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
 +
::*BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]
 +
|}
 +
 +
 +
 +
 +
 +
{|align="justify"
 +
|[[Image:Chiba-0823-2.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample No</td>
 +
<td>8~21</td>
 +
</tr>
 +
<tr>
 +
<td>Sample DNA</td>
 +
<td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>2</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>12</td>
 +
</tr>
 +
</table>
 +
 +
:From left;
 +
:(Single Digestion) Sanple No. 8~14
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] -> OK
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154] -> OK
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] -> OK
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] -> OK
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] -> OK
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] -> OK
 +
::*BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK
 +
 +
:(Double Digestion) Sample No. 15~21
 +
::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] -> OK
 +
::*BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154] -> OK
 +
::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] -> OK
 +
::*BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] -> OK
 +
::*BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] -> OK
 +
::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] -> OK
 +
::*BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK?
 +
|}
 +
 +
 +
 +
 +
:'''[[Team:Chiba/protocol/digestion|Digestion test]]'''
 +
::BBa_J04500(2007:old-sample)[http://partsregistry.org/Part:BBa_J04500]
 +
 +
<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample No</td>
 +
<td>1</td><td>2</td><td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Sample DNA</td>
 +
<td>3</td><td>3</td><td>3</td>
 +
</tr>
 +
<tr>
 +
<td>EcoRⅠ</td>
 +
<td>-</td><td>0.1</td><td>0.1</td>
 +
</tr>
 +
<tr>
 +
<td>SpeⅠ</td>
 +
<td>-</td><td>-</td><td>0.1</td>
 +
</tr>
 +
<tr>
 +
<td>EcoRⅠ Buffer</td>
 +
<td>-</td><td>0.9</td><td>0.8</td>
 +
</tr>
 +
<tr>
 +
<td>BSA</td>
 +
<td>-</td><td>1</td><td>1</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>-</td><td>5</td><td>5</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>3</td><td>10</td><td>10</td>
 +
</tr>
 +
</table>
 +
 +
 +
--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]'''
 +
{|align="justify"
 +
|[[Image:Chiba-0823-3.JPG]]
 +
|
 +
:<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000">
 +
<tr>
 +
<td width="257">Sample No</td>
 +
<td>1</td><td>2</td><td>3</td>
 +
</tr>
 +
<tr>
 +
<td>Sample DNA</td>
 +
<td>3</td><td>10</td><td>10</td>
 +
</tr>
 +
<tr>
 +
<td>Loading Dye</td>
 +
<td>1</td><td>2</td><td>2</td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>2</td><td>-</td><td>-</td>
 +
</tr>
 +
<tr>
 +
<td>TOTAL</td>
 +
<td>6</td><td>12</td><td>12</td>
 +
</tr>
 +
</table>
 +
:From left;
 +
::#BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK
 +
::#BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]Single Digestion -> OK
 +
::#BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]Double Digestion -> Bad
 +
|}
-
===[[Team:Chiba/jk/γ/weak 2|>next week]]===
+
===[[Team:Chiba/jk/β/weak 2|>next week]]===
{| style="color:white;background-color:Maroon" cellpadding="3" cellspacing="3" border="1" bordercolor="white" width="100%" align="center"
{| style="color:white;background-color:Maroon" cellpadding="3" cellspacing="3" border="1" bordercolor="white" width="100%" align="center"

Revision as of 08:46, 25 September 2008

>送受信班

Contents

Week 1

17 August, 2008

Transformation
competent cells : XL10G
  • BBa_R0040(2008) [http://partsregistry.org/Part:BBa_R0040] -> No colonies on plates
  • BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070] -> No colonies on plates
  • BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates
  • BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] -> No colonies on plates
  • BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] -> No colonies on plates
  • BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079] -> No colonies on plates

18 August, 2008

PCR
  • BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076]
  • BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077]
  • BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079]
  • BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control


DNA Template 1
dNTP mix 10
Foward Primer 5
Reverse Primer 5
DNA polymerase 1
Thermopol Buffer 10
dH2O 68
TOTAL 100μL


95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃


--->Gel Check


Chiba-0818.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
  • BBa_C0070(2008) [http://partsregistry.org/Part:BBa_C0070] ->None
  • BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] ->None
  • BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] ->None
  • BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] ->None
  • BBa_C0079(2008) [http://partsregistry.org/Part:BBa_C0079] ->None
  • BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control ->OK



Transformation

competent cells : XL10G

  • BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
  • BBa_C0076(2006) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates(19/8)
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]


--->(20/8)Mini prep

19 August, 2008

PCR
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_S3154(2007) [http://partsregistry.org/Part:BBa_S3154]
  • BBa_S3154(2006) [http://partsregistry.org/Part:BBa_S3154]
  • BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control


DNA Template 1
dNTP mix 10
Foward Primer 5
Reverse Primer 5
DNA polymerase VENT 1
Thermopol Buffer 5
dH2O 28
TOTAL 50μL


95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃


--->Gel Check
Chiba-0819.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] ->None
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] ->None
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] ->None
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] ->None
  • BBa_S3154(2007) [http://partsregistry.org/Part:BBa_S3154] ->None
  • BBa_S3154(2006) [http://partsregistry.org/Part:BBa_S3154] ->None
  • BBa_F2620(2007) [http://partsregistry.org/Part:BBa_F2620]・・・control ->OK


20 August, 2008

(18/8)--->Mini prep
  • BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]


--->Gel Check
Chiba-0820-3.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> None


Chiba-0820-4.JPG
Sample DNA 10
Loading Dye 4
dH2O 10
TOTAL 24μL
From left;
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> OK
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
  • BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070] -> OK
  • BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070] -> OK



Chiba-0820.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK


--->Digestion test

  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170]
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178]
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178]
Sample No 12345678
BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] 3---3---
BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -3---3--
BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] --3---3-
BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] ---3---3
EcoRⅠ 0.10.10.10.10.10.10.10.1
PstⅠ ----0.10.10.10.1
Buffer EcoRⅠ 11111111
BSA 11111111
dH2O 4.94.94.94.94.84.84.84.8
TOTAL 1010101010101010


--->Gel Check
Chiba-0820-2.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
(Single Digestion 1~4)
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK
(Double Digestion 1~4)
  • BBa_C0170(2006) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0170(2007) [http://partsregistry.org/Part:BBa_C0170] -> OK
  • BBa_C0178(2006) [http://partsregistry.org/Part:BBa_C0178] -> OK
  • BBa_C0178(2007) [http://partsregistry.org/Part:BBa_C0178] -> OK

21 August, 2008

(20/8)--->PCR
  • BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070]
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076]
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078]
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078]


DNA Template 1
dNTP mix 10
Foward Primer 5
Reverse Primer 5
DNA polymerase TAQ 1
Thermopol Buffer 5
dH2O 28
TOTAL 50μL


95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃


--->Gel Check
Chiba-0821.JPG
Sample DNA 3
Loading Dye 2
dH2O 7
TOTAL 12μL
From left;
  • BBa_C0078(2007) [http://partsregistry.org/Part:BBa_C0078] -> None
  • BBa_C0078(2006) [http://partsregistry.org/Part:BBa_C0078] -> None
  • BBa_C0076(2007) [http://partsregistry.org/Part:BBa_C0076] -> None
  • BBa_C0070(2007) [http://partsregistry.org/Part:BBa_C0070] -> OK
  • BBa_C0070(2006) [http://partsregistry.org/Part:BBa_C0070] -> OK


Transformation
competent cells : XL10G
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]



--->(23/8)Digestion


22 August, 2008

Transformation
competent cells : XL10G
  • BBa_J13002(2007) [http://partsregistry.org/Part:BBa_J13002]
  • BBa_J13002(2006) [http://partsregistry.org/Part:BBa_J13002]
  • BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]
  • BBa_J04500(2006) [http://partsregistry.org/Part:BBa_J04500]
(Locate & 2 Punch ~iyama ver.~)
  • BBa_C0076(2008) [http://partsregistry.org/Part:BBa_C0076] -> No colonies on plates
  • BBa_C0077(2008) [http://partsregistry.org/Part:BBa_C0077] -> No colonies on plates
  • BBa_C0078(2008) [http://partsregistry.org/Part:BBa_C0078] -> No colonies on plates
  • BBa_J04500(2008) [http://partsregistry.org/Part:BBa_J04500] -> No colonies on plates


--->(24/8)Mini prep

23 August, 2008

(21/8)--->Mini prep
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]


--->Digestion test
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]


Sample No 1 2 3 4 5 6 7 8 9101112131415161718192021
BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] 3------3------3------
BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] -3------3------3-----
BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] --3------3------3----
BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154] ---3------3------3---
BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] ----3------3------3--
BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] -----3------3------3-
BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] ------1------3------3
EcoRⅠ -------0.10.10.10.10.10.10.10.10.10.10.10.10.10.1
PstⅠ --------------0.10.10.10.10.10.10.1
Buffer EcoRⅠ -------0.90.90.90.90.90.90.90.80.80.80.80.80.80.8
BSA -------11111111111111
dH2O -------55555555555555
TOTAL 33333311010101010101010101010101010


--->Gel Check
Chiba-0823-1.JPG
Sample No 1~67
Sample DNA 31
Loading Dye 11
dH2O 24
TOTAL 66
From left; Sanple No. 1~7
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154]
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026]
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
  • BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]



Chiba-0823-2.JPG
Sample No 8~21
Sample DNA 10
Loading Dye 2
TOTAL 12
From left;
(Single Digestion) Sanple No. 8~14
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] -> OK
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154] -> OK
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] -> OK
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] -> OK
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] -> OK
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] -> OK
  • BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK
(Double Digestion) Sample No. 15~21
  • BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] -> OK
  • BBa_S03154(2006) [http://partsregistry.org/Part:BBa_S03154] -> OK
  • BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] -> OK
  • BBa_I9026(2006) [http://partsregistry.org/Part:BBa_I9026] -> OK
  • BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] -> OK
  • BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] -> OK
  • BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK?



Digestion test
BBa_J04500(2007:old-sample)[http://partsregistry.org/Part:BBa_J04500]
Sample No 123
Sample DNA 333
EcoRⅠ -0.10.1
SpeⅠ --0.1
EcoRⅠ Buffer -0.90.8
BSA -11
dH2O -55
TOTAL 31010


--->Gel Check

Chiba-0823-3.JPG
Sample No 123
Sample DNA 31010
Loading Dye 122
dH2O 2--
TOTAL 61212
From left;
  1. BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500] -> OK
  2. BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]Single Digestion -> OK
  3. BBa_J04500(2007) [http://partsregistry.org/Part:BBa_J04500]Double Digestion -> Bad

>next week

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