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Team:University of Chicago/Papers
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"[http://weisswebserver.ee.princeton.edu/papers/batt-2007-c.pdf Robustness analysis and tuning of synthetic gene networks]." Modeling gene networks (Weiss). ---Nora | "[http://weisswebserver.ee.princeton.edu/papers/batt-2007-c.pdf Robustness analysis and tuning of synthetic gene networks]." Modeling gene networks (Weiss). ---Nora | ||
"[http://weisswebserver.ee.princeton.edu/papers/batt-2007-b.pdf Model checking genetic regulatory networks with parameter uncertainty]." Another Weiss paper. --Nora | "[http://weisswebserver.ee.princeton.edu/papers/batt-2007-b.pdf Model checking genetic regulatory networks with parameter uncertainty]." Another Weiss paper. --Nora | ||
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| + | ====Other==== | ||
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| + | ''[http://openwetware.org/wiki/IGEM:MIT/2007/Ideas3 2007 Ideas].'' Great big honking list of references. ---Thomas Graham | ||
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| + | "[http://weisswebserver.ee.princeton.edu/papers/brenner-2007.pdf Quorum Sensing in E.Coli]" Bioluminescence Activation via Q.S. -Rob M | ||
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| + | "[http://www.patentstorm.us/patents/005466592.pdf]." Patent for stable extracellular tyrosinase which may or may not be useful --Laura | ||
Revision as of 23:08, 24 June 2008
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Please post links to relevant papers here with brief descriptions. Sign your name in case we have questions. I'll start us off with everything I've gotten by email so far.
Contents |
Expression
Patent: [http://www.google.com/patents?id=pLIgAAAAEBAJ&dq=5202236 Method of producing bioadhesive protein]. Making mussel proteins since 1990! ---Steve Kron
Patent: [http://www.google.com/patents?id=U-kgAAAAEBAJ&dq=mussel+adhesive Bioadhesive precursor protein expression vectors]. I swear these people just photocopied their application and mailed it out again. ---Steve Kron
Patent: [http://www.google.com/patents?id=nrQcAAAAEBAJ&dq=mussel+adhesive Production of bioadhesive precursor protein analogs by genetically engineered organisms]. New pictures this time. ---Steve Kron
Secretion
[http://www.springerlink.com/content/w8gj1t1j6v540083/fulltext.pdf An E. coli Expression System for the Extracellular Secretion of Barley α-Amylase (pdf)]. Entry into the wide-word of secretion-system manipulation.
[http://mmbr.asm.org/cgi/reprint/62/2/379 Type III protein secretion systems in Bacterial Pathogens of Plants and Animals (pdf)]. A nice review of natural type III secretion systems we can take advantage of, preferably without getting bubonic plague.
Salmonella Secretion pathway
[http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=2074921&blobtype=pdf Cloning and Transfer of the Salmonella Pathogenicity Island 2 Type III Secretion System for Studies of a Range of Gram-Negative Genera (pdf)]. Wilson, et al.
[http://www.springerlink.com/content/1q94h5030m3hf507/fulltext.pdf Cellular microbiology of intracellular Salmonella enterica: functions of the type III secretion system (pdf)]. Kuhle, et al.
[http://www.pnas.org/cgi/reprint/97/13/7539 A conserved amino acid sequence directing intracellular type III secretion(pdf)]. Miao, et al.
[http://iai.asm.org/cgi/reprint/74/10/5826 Optimization of the Delivery of Heterologous Proteins by the Salmonella enterica Serovar Typhimurium Type III Secretion System for Vaccine Development(pdf)]. Chen, et al.
Mgfp-5
[http://www.sciencedirect.com/science/article/B6T3C-4KXDR0V-2/1/a80e68f3d0ada12719651719e1cc11ec Recombinant mussel adhesive protein Mgfp-5 as cell adhesion biomaterial]. Modified Mgfp-5 is better than Cell-Tak or poly-L-lysine; unmodified is about the same as Cell-Tak. It survives harsher washes on glass than BSA or Cell-Tak. ---Steve Kron
[http://www.sciencedirect.com/science/article/B6TWB-4NMWRCS-F/1/9587d2845309a42beb00a6663a1b5085 Practical recombinant hybrid mussel bioadhesive fp-151]. A recombinant fp-1/fp-5 fusion protein works in cell bioadhesion assays. 1g/L production and soluble. ---Steve Kron
[http://pubs.acs.org/cgi-bin/sample.cgi/bipret/2008/24/i03/pdf/bp0703477.pdf Enhancement of Mussel Adhesive Protein Production in Escherichia coli by Co-expression of Bacterial Hemoglobin]. --Jata
Yeast/Tyrosinase
[http://www.jcb.org.proxy.uchicago.edu/cgi/reprint/131/4/895 The Golgi-localization of Yeast Emp47p Depends on Its Di-lysine Motif But Is Not Affected by the retl-1 Mutation in oL-COP]. --Jata
[http://web.ebscohost.com.proxy.uchicago.edu/ehost/pdf?vid=2&hid=13&sid=3f8e30a7-87ae-482e-8d71-5483a950a5e3%40sessionmgr9 Global analysis of protein localization in budding yeast ]. --Jata
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T20-4G4WYG2-1&_user=5745&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000001358&_version=1&_urlVersion=0&_userid=5745&md5=37ee3677ce5f8f5d095c73b898da414c Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae]. --Jata
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T1V-3XX6VB3-2H&_user=5745&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000001358&_version=1&_urlVersion=0&_userid=5745&md5=cc4d2fbcbd990c68b62f4a042239f15c Molecular cloning and nucleotide sequence of the protyrosinase gene, melO, from Aspergillus oryzae and expression of the gene in yeast cells]. --Jata
Computer Modeling
"[http://weisswebserver.ee.princeton.edu/papers/batt-2007-c.pdf Robustness analysis and tuning of synthetic gene networks]." Modeling gene networks (Weiss). ---Nora
"[http://weisswebserver.ee.princeton.edu/papers/batt-2007-b.pdf Model checking genetic regulatory networks with parameter uncertainty]." Another Weiss paper. --Nora
Other
[http://openwetware.org/wiki/IGEM:MIT/2007/Ideas3 2007 Ideas]. Great big honking list of references. ---Thomas Graham
"[http://weisswebserver.ee.princeton.edu/papers/brenner-2007.pdf Quorum Sensing in E.Coli]" Bioluminescence Activation via Q.S. -Rob M
"[http://www.patentstorm.us/patents/005466592.pdf]." Patent for stable extracellular tyrosinase which may or may not be useful --Laura
