Team:Heidelberg/Modeling/Chemotaxis

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Revision as of 20:28, 29 October 2008

Chemotaxis - Killing Model

Our detailed documentation "Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli." includes the following information:

Introduction into the biological sytem
Chemotaxis model
Parameter estimation
Numerical methods
Results
Conclusions

You can download the documentation on Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli. Further we have made a summary of the complete modeling group for non-mathematicians.

Simulation movies

Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com/ for help).

movie 1 (3D, 2D)
- 4-PDE system
- killer cells positioned in corner
- prey evenly distributed
movie 2 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
movie 3 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 1/1000 AI-2 production rate
movie 4 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 4-fold chemotactic activity towards AI-2
movie 5 (3D, 2D)
- 5-PDE system
- killer cells evenly distributed
- prey positioned in center

@@ Line 477: / Line 477: @@
 === Simulation movies ===
-Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format.
+Below is a list of simulation movies. Specific parameters can be taken from our documentation. All simulations are in ogg vorbis format (see http://www.vorbis.com/ for help).
 * movie 1 ([https://static.igem.org/mediawiki/2008/7/7f/HD_4PDE_3D.ogg '''3D'''], [https://static.igem.org/mediawiki/2008/6/6d/HD_4PDE_2D.ogg '''2D'''])