Team:Paris/Modeling/Roadmap

(Difference between revisions)

Revision as of 13:31, 6 August 2008

06/07 - First model of the FIFO temporal order, of the backward control inducing the oscillations ⇒ DONE
08/07 - Model the synchronization between cells, using Biocham
08/15 - Summary about the ODE method, Space introduction into models (AC, Delaunay)
08/22 - Feedback: list missing things (parameters), Optimization, Robustness analysis

10/15 - Scheduled wiki ending (2 weeks before the real ending to finish details)
10/31 - Official wiki ending (date to be checked)

   ** Synchronyzation
   ** Estimation of the FIFO processes
   ** Stochastic modeling (Gilespie)

   **repressilator
   ** comparison

   **Better FIFO behaviour
   **Other interactions to increase the robustness

@@ Line 20: / Line 20: @@
 ==Todo==
-===Design a modular Matlab modelisation of our system===
+* Continue the previous model
-Using the following approach:
+    ** Synchronyzation
-* 3 modules corresponding to the FIFO Temporal Order function, the Oscillation's one and the Sync function.
+    ** Estimation of the FIFO processes
-* Gather the 3 modules using a blackbox approach: each function is a box having its own inputs and outputs and does not interact with the others.
+    ** Stochastic modeling (Gilespie)
-* Divide each box in smaller parts that we can quickly try in the wet lab to figure out precisely some missing parameters.
-===Implement the same models in BIOCHAM===
+*Test of robustness
-It will allow easier:
+    **repressilator
-* Exploration of the paramaters space
+    ** comparison
-* Evalution of the robustness
-* Changes (to a stochastic model for example)
+*Enhancing the system
+    **Better FIFO behaviour
+    **Other interactions to increase the robustness
-===MGS===
-* Understand the syntax!
-* Develop a 3D model to simulate diffusion even if the medium will in fact be shook.
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