Team:Paris/Modeling/simul

From 2008.igem.org

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<div class=Section1>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>% <span class=GramE>simul.m :</span> simulation of the
 +
model</span><span lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:
 +
"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
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mso-ansi-language:EN-GB'>%%% Commentary: This function is used in the
 +
premiermodele.m file that has</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:forestgreen;mso-ansi-language:EN-GB'>%%% to be launched.</span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
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mso-ansi-language:EN-GB'>%%% Code:</span><span lang=EN-GB style='font-family:
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"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:blue;mso-ansi-language:EN-GB'>function</span></span><span lang=EN-GB
 +
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 +
EN-GB'> [y,t]=simul(t,xinit)</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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style='font-size:10.0pt;font-family:"Courier New";color:forestgreen'>%<span
 +
style='mso-spacerun:yes'>  </span>[y<span class=GramE>,t</span>]=simul(t,xinit)</span><span
 +
style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
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class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
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color:forestgreen;mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>
 +
</span>t</span></span><span lang=EN-GB style='font-size:10.0pt;font-family:
 +
"Courier New";color:forestgreen;mso-ansi-language:EN-GB'> : duration of the
 +
simulation</span><span lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:
 +
"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:forestgreen;mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>
 +
</span>xinit</span></span><span lang=EN-GB style='font-size:10.0pt;font-family:
 +
"Courier New";color:forestgreen;mso-ansi-language:EN-GB'>: initial state</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
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color:forestgreen;mso-ansi-language:EN-GB'>%<span style='mso-spacerun:yes'>
 +
</span>y</span></span><span lang=EN-GB style='font-size:10.0pt;font-family:
 +
"Courier New";color:forestgreen;mso-ansi-language:EN-GB'>: output</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
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mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'><span style='mso-spacerun:yes'> </span></span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>% simulation</span><span lang=EN-GB style='font-family:
 +
"Courier New";mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
class=GramE><span lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";
 +
color:black;mso-ansi-language:EN-GB'>options</span></span><span lang=EN-GB
 +
style='font-size:10.0pt;font-family:"Courier New";color:black;mso-ansi-language:
 +
EN-GB'> = odeset(</span><span lang=EN-GB style='font-size:10.0pt;font-family:
 +
"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'RelTol'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,1e-4,</span><span lang=EN-GB style='font-size:10.0pt;
 +
font-family:"Courier New";color:#A020F0;mso-ansi-language:EN-GB'>'AbsTol'</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>,[1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4]);</span><span
 +
lang=EN-GB style='font-family:"Courier New";mso-bidi-font-family:"Times New Roman";
 +
mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal style='mso-layout-grid-align:none;text-autospace:none'><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:black;
 +
mso-ansi-language:EN-GB'>[<span class=GramE>t,</span>y] = <span class=GramE>ode23(</span>@modele,t,xinit,options);</span><span
 +
lang=EN-GB style='font-size:10.0pt;font-family:"Courier New";color:forestgreen;
 +
mso-ansi-language:EN-GB'>% This function computes the output of the ode
 +
previously defined.</span><span lang=EN-GB style='font-family:"Courier New";
 +
mso-bidi-font-family:"Times New Roman";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 +
 +
<p class=MsoNormal><span lang=EN-GB style='mso-ansi-language:EN-GB'><o:p>&nbsp;</o:p></span></p>
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 +
</div>
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|}<br style="clear:both" />
|}<br style="clear:both" />

Revision as of 17:28, 6 August 2008

% simul

% simul.m : simulation of the model

%%% Commentary: This function is used in the premiermodele.m file that has

%%% to be launched.

%%% Code:

function [y,t]=simul(t,xinit)

% [y,t]=simul(t,xinit)

% t : duration of the simulation

% xinit: initial state

% y: output

% simulation

options = odeset('RelTol',1e-4,'AbsTol',[1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4 1e-4]);

[t,y] = ode23(@modele,t,xinit,options);% This function computes the output of the ode previously defined.

 
Retrieved from "http://2008.igem.org/Team:Paris/Modeling/simul"