Team:BCCS-Bristol/Modeling-To Do List

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<html><link rel="stylesheet" href="http://www.chofski.co.uk/iGEM/bccs-igem.css" type="text/css"></html>
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__NOTOC__
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{|  align="center"
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!align="center"|[[Team:BCCS-Bristol|Home]]
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!align="center"|[[Team:BCCS-Bristol/Team|The Team]]
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!align="center"|[[Team:BCCS-Bristol/Project|The Project]]
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!align="center"|[[Team:BCCS-Bristol/Parts|Submitted Parts]]
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!align="center"|[[Team:BCCS-Bristol/Modeling|Modelling]]
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!align="center"|[[Team:BCCS-Bristol/Notebook|Wet Lab]]
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!align="center"|[[Team:BCCS-Bristol/Calendar|Calendar]]
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!align="center"|[[Team:BCCS-Bristol/Misc|Miscellaneous]]
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== Modelling To Do List ==
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=== GRN Modelling ===
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=== BSim Framework Coding ===
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* '''Multi-threading Optimisations''' - Update the main computational classes to split up work into separate threads. Should improve performance when running on a single computer.
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** '''BSimChemicalField''' [Done] - Update class to use worker threads when calculating the new diffusion field.
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** '''BSimCollisionPhysics''' - Update class to use worker threads when calculating the force matrix.
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* '''Batch Processing''' - We need to be able to run batch runs of simulations to get enough results for statistical analysis.
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** '''Parameter File Definition''' -
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** '''BSimBatch''' - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement.
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** '''Blue Crystal Accounts''' - Contact university about getting accounts to run some larger scale simulations
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=== BSim Simulations ===
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Revision as of 12:33, 13 August 2008

Home The Team The Project Submitted Parts Modelling Wet Lab Calendar Miscellaneous


Modelling To Do List

GRN Modelling

BSim Framework Coding

  • Multi-threading Optimisations - Update the main computational classes to split up work into separate threads. Should improve performance when running on a single computer.
    • BSimChemicalField [Done] - Update class to use worker threads when calculating the new diffusion field.
    • BSimCollisionPhysics - Update class to use worker threads when calculating the force matrix.
  • Batch Processing - We need to be able to run batch runs of simulations to get enough results for statistical analysis.
    • Parameter File Definition -
    • BSimBatch - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement.
    • Blue Crystal Accounts - Contact university about getting accounts to run some larger scale simulations


BSim Simulations


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