Edinburgh/Notebook/PCR products

From 2008.igem.org

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Revision as of 10:49, 28 August 2008

Edinburgh iGEM 2008

P1: dxs from Escherichia coli JM109. (25.06.08)
P2: appY from E. coli JM109. (25.06.08)
P3: glgC from E. coli JM109. (25.06.08)
P4: Fusion PCR for BABEL1+glgC. (01.07.08)
P5: Fusion PCR for BABEL2+glgC. (01.07.08)
P6: Mutagenic PCR to remove EcoRI site 1 from glgC (M11). (04.07.08)
P7: Mutagenic PCR to remove EcoRI site 2 from glgC (M11). (04.07.08)
P8: crtB (from Pantoea ananatis cells). (08.07.08)
P9: crtI (from Douglas's maxiprep of the mutated crtIB plasmid). (08.07.08)
P10: crtY (from P. ananatis cells). Failed. (08.07.08)
P11: Fusion PCR of rbs+dxs. Failed. (10.07.08)
P12: Repeat fusion PCR of rbs+dxs, using L11 and primers rbs2fclon1+pSB1A2insr1. (13.07.08)
P13-P14: MABEL mutation of site 1 on glgC-mut2 clones M19 and M22. (14.07.08)
P15: Rusion PCR for rbs+appY using L15 as a template. (15.07.08)
P16-P19: First attempts at cenA, cenB, cenC and cex. (17.07.08) - Failed
P20-P23: Second attempts at cenA, cenB, cenC and cex. (18.07.08) - Failed
P24-P25: Repeat PCR for cenA and cex using Pfu. (19.07.08) - Failed
P26: Positive control PCR with primers fd1 and rd1 to amplify 16S rRNA gene rrnB from C. fimi. (22.07.08: AM) - Failed
P27: crtY from P. ananatis cells. (23.07.08: AM, Yan, OG) - Failed
P28: Fusion PCR of rbs+crtB from L18. (23.07.08: AM, Yan, OG)
P29: Fusion PCR of rbs+crtI from L19. (23.07.08: AM, Yan, OG)
P30: Repeat positive control of rrnB from C. fimi, annealing 1 minute. (23.07.08: AM)
P31: pZntA promoter
P32-P35: Repeat PCR of cenA, cenB, cenC and cex, annealing 1 minute. (24.07.08: AM) - Failed
P36: M43 (glgC-mut1,2) with primers glgCf2/glgCr2. (25.07.08: AM)
P37: crtY from P. ananatis. (25.07.08: AM) - Failed
P38-P41: cenA, cenB, cenC and cex from heat-killed cell suspension. (28.07.08: AM)
P42-P45: cenA, cenB, cenC and cex from 'impure' DNA solution. (28.07.08: AM)
P46-P47: cenA and cex from 'impure' DNA solution, annealing 65C. (20.07.08: AM) - Failed
P48: crtY (new primer mixture) (30.07.08: CF) - Failed
P49: Recreation of P12 (rbs+dxs) (30.07.08: CF)
P50: Third mutagenesis of glgC-mut1,2 by MABEL (04.08.08: Yan)
P51: pCstA from E. coli cells (06.08.08: CF) - Failed
P52: cenA from heat killed C. fimi (07/08/08: YAN, AM) - Failed
P53: cex from heat killed C. fimi (07/08/08: YAN, AM) - Failed
P54: pCstA from E. coli cells - Purified (07.08.08: CF)
P55: PCR products of CenA by KOD
P56: PCR products of CenA by velocity
P57: PCR products of CeX by KOD
P58: PCR products of CeX by Velocity
P59: pSB1A2-crtY (09.08.08: CF)
P60: pSB1A2-rbs+crtY (09.08.08: CF)
P61: 16s rRNA rrnB from C. fimi genomic DNA - successful(10.08.08: CF)
P62: cenA from C. fimi genomic DNA - failed (10.08.08: CF)
P63: cex from C. fimi genomic DNA - failed (10.08.08: CF)
P64: cex from C. fimi genomic DNA, w/ glycerol, annealing 60°C. Success (11.08.08: AM)
P65: cenA from C. fimi genomic DNA, w/ glycerol, annealing 56°C/20s. Success (12.08.08: AM)
P66: zm1 (ISA1) (12.08.08: CF)
P67: zm2 (ISA2) (12.08.08: CF)
P68: cenB from C. fimi genomic DNA. Failed (13.08.08: AM)
P69: cenC from C. fimi genomic DNA. Failed (13.08.08: AM)
P70: M43 (glgC mut 1+2). Failed (14.08.08: AM)
P71: M120 (glgC mut 1+2+3). Successful (14.08.08: AM)
P71A: Repeat M43 (glgc mut 1+2). Succeessful (15.08.08: AM)
P72: Repeat M120 (glgC mut 1+2+3). Successful (15.08.08: AM)
P73~P77: rrnB from C. fimi genomic DNA purified on 14.08.08. P74 possibly successful (15.08.08: AM)
P78A: rrnB from original C. fimi genomic DNA as positive control. Failed (15.08.08: AM)
P78: SOB2-glgC mut 1+2 from L45 (19.08.08: AM)
P79: SOB2-glgC mut 1+2+3 from L46 (19.08.08: AM)
P80: SOB2-glgC mut 1+2+3 from L47 (19.08.08: AM)
P81: SOB2-rbs-glgc mut 1+2 from L45 (19.08.08: AM)
P82: SOB2-rbs-glgC mut 1+2+3 from L46 (19.08.08: AM)
P83: SOB2-rbs-glgC mut 1+2+3 from L47 (19.08.08: AM)
P84: zm1 (ISA1) from X11 (20.08.08: AM)
P85: zm2 (ISA2) from X12 (20.08.08: AM)

@@ Line 1: / Line 1: @@
 <html>
 <head>
-<title>Edinburgh iGem 2008</title>
+<title>Edinburgh iGEM 2008</title>
 <script type="text/javascript">
 //Drop Down Tabs Menu- Author: Dynamic Drive (http://www.dynamicdrive.com)
@@ Line 7: / Line 7: @@
 var tabdropdown={
-*	disappeardelay: 200, //set delay in miliseconds before menu disappears onmouseout
+	disappeardelay: 200, //set delay in miliseconds before menu disappears onmouseout
 	disablemenuclick: false, //when user clicks on a menu item with a drop down menu, disable menu item's link?
 	enableiframeshim: 1, //1 or 0, for true or false
@@ Line 271: / Line 271: @@
 <li><a href="https://2008.igem.org/Team:Edinburgh" title="Home"><span>Home</span></a></li>
 <li><a href="https://2008.igem.org/Team:Edinburgh/Project" title="Project" rel="dropmenu1_a"><span>The Project</span></a></li>
-<li><a href="https://2008.igem.org/Team:Edinburgh/Team" title="Team" ><span>The Team</span></a></li>
-<li><a href="http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2008&group=Edinburgh" title="Project" rel="dropmenu1_a"><span>BioBrick Parts</span></a></li>
 <li><a href="https://2008.igem.org/Team:Edinburgh/Modeling" title="Modelling" rel="dropmenu2_a"><span>Modelling</span></a></li>
 <li><a href="https://2008.igem.org/Team:Edinburgh/Notebook" title="Notebook"><span>Notebook</span></a></li>
+<li><a href="https://2008.igem.org/Team:Edinburgh/Results" title="Results" rel="dropmenu1_a"><span>Results</span></a></li>
+<li><a href="http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2008&group=Edinburgh" title="Parts" rel="dropmenu1_a"><span>BioBrick Parts</span></a></li>
+<li><a href="https://2008.igem.org/Team:Edinburgh/Team" title="Team" ><span>The Team</span></a></li>
 </ul>
 </div>
@@ Line 292: / Line 293: @@
 '''P2:''' ''appY'' from ''E. coli'' JM109. (25.06.08)<br />
 '''P3:''' ''glgC'' from ''E. coli'' JM109. (25.06.08)<br />
-'''P4:''' fusion PCR for BABEL1+''glgC''. (01.07.08)<br />
+'''P4:''' Fusion PCR for BABEL1+''glgC''. (01.07.08)<br />
-'''P5:''' fusion PCR for BABEL2+''glgC''. (01.07.08)<br />
+'''P5:''' Fusion PCR for BABEL2+''glgC''. (01.07.08)<br />
-'''P6:''' mutagenic PCR to remove EcoRI site 1 from ''glgC'' (M11). (04.07.08)<br />
+'''P6:''' Mutagenic PCR to remove EcoRI site 1 from ''glgC'' (M11). (04.07.08)<br />
-'''P7:''' mutagenic PCR to remove EcoRI site 2 from ''glgC'' (M11). (04.07.08)<br />
+'''P7:''' Mutagenic PCR to remove EcoRI site 2 from ''glgC'' (M11). (04.07.08)<br />
 '''P8:''' ''crtB'' (from ''Pantoea ananatis'' cells). (08.07.08)<br />
 '''P9:''' ''crtI'' (from Douglas's maxiprep of the mutated ''crtIB'' plasmid). (08.07.08)<br />
 '''P10:''' ''crtY'' (from ''P. ananatis'' cells). Failed. (08.07.08)<br />
-'''P11:''' fusion PCR of rbs+''dxs''. Failed. (10.07.08)<br />
+'''P11:''' Fusion PCR of rbs+''dxs''. Failed. (10.07.08)<br />
-'''P12:''' repeat fusion PCR of rbs+''dxs'', using L11 and primers rbs2fclon1+pSB1A2insr1. (13.07.08)<br />
+'''P12:''' Repeat fusion PCR of rbs+''dxs'', using L11 and primers rbs2fclon1+pSB1A2insr1. (13.07.08)<br />
 '''P13-P14:''' MABEL mutation of site 1 on ''glgC''-mut2 clones M19 and M22. (14.07.08)<br />
-'''P15:''' fusion PCR for rbs+''appY'' using L15 as a template. (15.07.08)<br />
+'''P15:''' Rusion PCR for rbs+''appY'' using L15 as a template. (15.07.08)<br />
-'''P16-P19:''' first attempts at ''cenA'', ''cenB'', ''cenC'' and ''cex''. (17.07.08) - Failed<br />
+'''P16-P19:''' First attempts at ''cenA'', ''cenB'', ''cenC'' and ''cex''. (17.07.08) - Failed<br />
-'''P20-P23:''' second attempts at ''cenA'', ''cenB'', ''cenC'' and ''cex''. (18.07.08) - Failed<br />
+'''P20-P23:''' Second attempts at ''cenA'', ''cenB'', ''cenC'' and ''cex''. (18.07.08) - Failed<br />
-'''P24-P25:''' repeat PCR for ''cenA'' and ''cex'' using Pfu. (19.07.08) - Failed<br />
+'''P24-P25:''' Repeat PCR for ''cenA'' and ''cex'' using Pfu. (19.07.08) - Failed<br />
 '''P26:''' Positive control PCR with primers fd1 and rd1 to amplify 16S rRNA gene ''rrnB'' from ''C. fimi''. (22.07.08: AM) - Failed<br />
 '''P27:''' ''crtY'' from ''P. ananatis'' cells. (23.07.08: AM, Yan, OG) - Failed<br />
-'''P28:''' fusion PCR of rbs+''crtB'' from L18. (23.07.08: AM, Yan, OG)<br />
+'''P28:''' Fusion PCR of rbs+''crtB'' from L18. (23.07.08: AM, Yan, OG)<br />
-'''P29:''' fusion PCR of rbs+''crtI'' from L19. (23.07.08: AM, Yan, OG)<br />
+'''P29:''' Fusion PCR of rbs+''crtI'' from L19. (23.07.08: AM, Yan, OG)<br />
-'''P30:''' repeat positive control of ''rrnB'' from ''C. fimi'', annealing 1 minute. (23.07.08: AM)<br />
+'''P30:''' Repeat positive control of ''rrnB'' from ''C. fimi'', annealing 1 minute. (23.07.08: AM)<br />
 '''P31:''' pZntA promoter<br />
-'''P32-P35:''' repeat PCR of ''cenA'', ''cenB'', ''cenC'' and ''cex'', annealing 1 minute. (24.07.08: AM) - Failed<br />
+'''P32-P35:''' Repeat PCR of ''cenA'', ''cenB'', ''cenC'' and ''cex'', annealing 1 minute. (24.07.08: AM) - Failed<br />
 '''P36:''' M43 (''glgC''-mut1,2) with primers glgCf2/glgCr2. (25.07.08: AM)<br />
 '''P37:''' ''crtY'' from ''P. ananatis''. (25.07.08: AM) - Failed<br />
@@ Line 320: / Line 321: @@
 '''P48:''' ''crtY'' (new primer mixture) (30.07.08: CF) - Failed<br />
 '''P49:''' Recreation of P12 (rbs+''dxs'') (30.07.08: CF)<br />
-'''P50:''' third mutagenesis of ''glgc''-mut1,2 (04.08.08: YAN)<br />
+'''P50:''' Third mutagenesis of ''glgC''-mut1,2 by MABEL (04.08.08: Yan)<br />
 '''P51:''' pCstA from ''E. coli'' cells (06.08.08: CF) - Failed<br />
 '''P52:''' ''cenA'' from heat killed ''C. fimi'' (07/08/08: YAN, AM) - Failed<br />