Team:Paris/Modeling/Molecular Reactions

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Revision as of 23:45, 26 October 2008

Molecular Reactions

We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the Template:Blue is described. Each of those reactions has to be "mathematically interpreted", in a Template:Blue that accounts for the important phenomenon, and in the same time allows us to find Template:Blue every involved parameters.

↓ see more ↑

The system we are studying is the Template:Blue that we can represent in the scheme just below (with all alternatives pFlhDC or pTet and TetR or envZ or OmpR^*)

↓ see more ↑

core system

The "core systeme"
* Every interactions are modelised by a ƒX function
* The detailed example FP1 = ƒ5([FlhDC],[FliA]) is surrounded in red

Complexation Reactions

The double triangle (|><|) is a symbol for complexations :
means n₁ molecules of FlhDC complexed with a pFliA promoter

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FlhDC and FliA bind to pFliL :

Production Reactions

The double triangle (|><|) is a symbol for complexations :
means n₁ molecules of FlhDC complexed with a pFliA promoter

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FlhDC><pFliL and FliA><pFliL causes "production" of FP1 :

Degradation/Dilution Reactions

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FP1 disappears because of its degradation and dilution :

for complete .pdf with all reactions and references : [list of reactions/equations]

@@ Line 4: / Line 4: @@
 We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the {{blue|system}} is described. Each of those reactions has to be "mathematically interpreted", in a {{blue|model}} that accounts for the important phenomenon, and in the same time allows us to find {{blue|experimentally}} every involved parameters.
-see [[Team:Paris/Modeling/Protocol_Of_Caracterisation|the steps of the system]]
+{{Paris/Toggle|see more|Team:Paris/Modeling/More_Mol_Reac_Intro}}
-    [[Team:Paris/Modeling/FromMolReactToNLOde|the modeling]]
-    [[Team:Paris/Modeling/Protocol_Of_Caracterisation|the protocol of characterization]]
 <br>
-'''The System we are studying is the "Core System" ''' (see [[Team:Paris/Network_Design1|Network Design]]) that we can represent in the scheme just below, with all alternatives (''pFlhDC/pTet'' ; ''TetR/EnvZ/OmpR<sup>*</sup>'') : [[Image:CoreSystemf5.jpg|thumb|center|The Full System<br>The interaction surrounded in red (f5) is the one of the detailed example]]
+'''The system we are studying is the {{blue|"Core System"}} ''' that we can represent in the scheme just below (with all alternatives ''pFlhDC'' or ''pTet'' and ''TetR'' or ''envZ'' or ''OmpR<sup>*</sup>'')
+{{Paris/Toggle|see more|Team:Paris/Modeling/More_Mol_Reac_System}}
 {| border="1" width="100%" style="text-align: center"