"
Team:Paris/Modeling/Molecular Reactions
From 2008.igem.org
(Difference between revisions)
| Line 4: | Line 4: | ||
We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the <span style="color:#0000FF;">system</span> is described. Each of those reactions has to be "mathematically interpreted", in a <span style="color:#0000FF;">model</span> that accounts for the important phenomenon, and in the same time allows us to find <span style="color:#0000FF;">experimentally</span> every involved parameters. | We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the <span style="color:#0000FF;">system</span> is described. Each of those reactions has to be "mathematically interpreted", in a <span style="color:#0000FF;">model</span> that accounts for the important phenomenon, and in the same time allows us to find <span style="color:#0000FF;">experimentally</span> every involved parameters. | ||
| - | <div style="text-align: | + | <div style="text-align: center"> |
{{Paris/Toggle|precisions|Team:Paris/Modeling/More_Mol_Reac_Intro}} | {{Paris/Toggle|precisions|Team:Paris/Modeling/More_Mol_Reac_Intro}} | ||
</div> | </div> | ||
| Line 10: | Line 10: | ||
<br> | <br> | ||
| - | '''The system we are studying is the <span style="color:#0000FF;">"Core System"</span> ''' that we can represent in the <span style="color:#0000FF;">scheme</span> just below (with all alternatives ''pFlhDC'' or ''pTet'' and ''TetR'' or ''envZ'' or ''OmpR<sup>*</sup>'') | + | '''The system we are studying is the <span style="color:#0000FF;">"Core System"</span> with three genes of interest''' that we can represent in the <span style="color:#0000FF;">scheme</span> in the precisions just below (with all alternatives ''pFlhDC'' or ''pTet'' and ''TetR'' or ''envZ'' or ''OmpR<sup>*</sup>'') |
| - | <div style="text-align: | + | <div style="text-align: center"> |
{{Paris/Toggle|precisions|Team:Paris/Modeling/More_Mol_Reac_System}} | {{Paris/Toggle|precisions|Team:Paris/Modeling/More_Mol_Reac_System}} | ||
</div> | </div> | ||
| Line 21: | Line 21: | ||
|- | |- | ||
| width="75%" | '''Complexation Reactions''' <br> | | width="75%" | '''Complexation Reactions''' <br> | ||
| - | The double triangle ( | + | The double triangle ('''><''') is a symbol for complexations : <br> |
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br> | [[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br> | ||
| Line 27: | Line 27: | ||
| width="25%" | '''On the Example :''' <br> | | width="25%" | '''On the Example :''' <br> | ||
| - | How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? <br> | + | <small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small><br> |
<br> | <br> | ||
* ''FlhDC'' and ''FliA'' bind to ''pFliL'' : <br> | * ''FlhDC'' and ''FliA'' bind to ''pFliL'' : <br> | ||
| Line 36: | Line 36: | ||
|- | |- | ||
| width="75%" | '''Production Reactions''' <br> | | width="75%" | '''Production Reactions''' <br> | ||
| - | The double triangle ( | + | The double triangle ('''><''') is a symbol for complexations : <br> |
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br> | [[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br> | ||
| Line 42: | Line 42: | ||
| width="25%" | '''On the Example :''' <br> | | width="25%" | '''On the Example :''' <br> | ||
| - | How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? <br> | + | <small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small> <br> |
<br> | <br> | ||
* ''FlhDC><pFliL'' and ''FliA><pFliL'' causes "production" of ''FP1'' : <br> | * ''FlhDC><pFliL'' and ''FliA><pFliL'' causes "production" of ''FP1'' : <br> | ||
| Line 54: | Line 54: | ||
| width="25%" | '''On the Example :''' <br> | | width="25%" | '''On the Example :''' <br> | ||
| - | How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? <br> | + | <small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small><br> |
<br> | <br> | ||
* ''FP1'' disappears because of its degradation and dilution : <br> | * ''FP1'' disappears because of its degradation and dilution : <br> | ||
Revision as of 00:12, 27 October 2008
|
Molecular Reactions
We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the system is described. Each of those reactions has to be "mathematically interpreted", in a model that accounts for the important phenomenon, and in the same time allows us to find experimentally every involved parameters. ↓ precisions ↑
The system we are studying is the "Core System" with three genes of interest that we can represent in the scheme in the precisions just below (with all alternatives pFlhDC or pTet and TetR or envZ or OmpR*) ↓ precisions ↑
for complete .pdf with all reactions and references : [list of reactions/equations]
|
