Team:Paris/Modeling/Implementation

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Revision as of 18:32, 27 October 2008

Implementation


[Back to "Workflow on an Example"]

We use Matlab for all implementations.

Parameters Finder Programs

The experimental datas consist typically in two tables, X_data (various concentrations of the transcription factor) and Y_data (corresponding output values, deduced from the fluorescence of the reporter GFP).

  • controlling X_data : thanks to the prior characterization of the inductible promoters that control the transcription factor concentrations, we can deduce from the Inv_f1.m and Inv_f2.m functions the necessary concentrations of aTc and arabinose to introduce in the medium to get the wanted concentrations of transcription factor.
  • getting Y_data : the linear conversion between the fluorescence of GFP at maturation and its concentration gives us directly the expected datas.
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