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Team:BCCS-Bristol/Modeling-Software
From 2008.igem.org
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=== Pre-Compiled Versions === | === Pre-Compiled Versions === | ||
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[http://2008sw.igem.org/bccs_bristol/bin/BSim.jar '''BSim.jar'''] (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16) | [http://2008sw.igem.org/bccs_bristol/bin/BSim.jar '''BSim.jar'''] (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16) | ||
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=== User Guide === | === User Guide === | ||
[https://2008.igem.org/Team:BCCS-Bristol/BSim-User-Guide '''BSim User Guide'''] | [https://2008.igem.org/Team:BCCS-Bristol/BSim-User-Guide '''BSim User Guide'''] | ||
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| + | == GRN Matlab Scripts == | ||
| + | |||
| + | === Sender === | ||
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| + | [http://2008sw.igem.org/bccs_bristol/src/GRN/sender.m '''Sender GRN'''] | ||
| + | [http://2008sw.igem.org/bccs_bristol/src/GRN/varyCpxR.m '''Vary CpxR concentration] - Shows levels of AHL outputted by sender when C<sub>pMax</sub> is varied. | ||
| + | |||
| + | === Transport === | ||
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| + | [http://2008sw.igem.org/bccs_bristol/src/GRN/transport.m '''Transport'''] | ||
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| + | === Reciever === | ||
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| + | [http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m '''Reciever'''] | ||
| + | [http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m '''Vary AHL concentration'''] - Shows levels of mCherry outputted by reciever when levels of AHL are varied. | ||
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=== Acknowledgements === | === Acknowledgements === | ||
Revision as of 15:19, 28 October 2008
BSim
Pre-Compiled Versions
[http://2008sw.igem.org/bccs_bristol/bin/BSim.jar BSim.jar] (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)
Source Code
[http://2008sw.igem.org/bccs_bristol/src/BSim_Source.zip BSim Source Code] (zip file)
User Guide
GRN Matlab Scripts
Sender
[http://2008sw.igem.org/bccs_bristol/src/GRN/sender.m Sender GRN] [http://2008sw.igem.org/bccs_bristol/src/GRN/varyCpxR.m Vary CpxR concentration] - Shows levels of AHL outputted by sender when CpMax is varied.
Transport
[http://2008sw.igem.org/bccs_bristol/src/GRN/transport.m Transport]
Reciever
[http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m Reciever] [http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m Vary AHL concentration] - Shows levels of mCherry outputted by reciever when levels of AHL are varied.
Acknowledgements
- Werner Randelshofer ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class
- David J. Eisenberg (david@catcode.com) - PNGEncoder.java class
GRN MATLAB Scripts
