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Team:Heidelberg/Modeling/Chemotaxis
From 2008.igem.org
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Our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism" includes the following information: | Our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism" includes the following information: | ||
* Introduction into the biological sytem | * Introduction into the biological sytem | ||
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* Conclusions | * Conclusions | ||
| - | You can download the documentation [[Media:Documentation_Sensing_Colicin.pdf| | + | You can download the documentation on [[Media:Documentation_Sensing_Colicin.pdf|Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in ''Escherichia Coli'']]. Further we have made a [[Media:Summary.pdf|summary]] of the complete modeling group for non-mathematicians. |
Revision as of 16:02, 29 October 2008
Chemotaxis - Killing Model
Our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism" includes the following information:
- Introduction into the biological sytem
- Chemotaxis model
- Parameter estimation
- Numerical methods
- Results
- Conclusions
You can download the documentation on Spatially Resolved Modeling of Colicin-Induced Killing and Chemotactic Sensing in Escherichia Coli. Further we have made a summary of the complete modeling group for non-mathematicians.
Simulation movies
Below is a list of simulation movies. Specific parameters can be taken from our documentation.
- movie 1 (3D, 2D)
- 4-PDE system
- killer cells positioned in corner
- prey evenly distributed
- movie 2 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- movie 3 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 1/1000 AI-2 production rate
- movie 4 (3D, 2D)
- 5-PDE system
- killer cells positioned in corner
- prey evenly distributed
- 4-fold chemotactic activity towards AI-2
- movie 5 (3D, 2D)
- 5-PDE system
- killer cells evenly distributed
- prey positioned in center
