Team:BCCS-Bristol/Modeling-To Do List

Modelling To Do List

GRN Modelling

BSim Framework

Multi-threading Optimisations

Update the main computational classes to split up work into separate threads. Should improve performance when running on a single computer.

• BSimChemicalField [Done] - Update class to use worker threads when calculating the new diffusion field.
• BSimCollisionPhysics - Update class to use worker threads when calculating the force matrix.</red>

Batch Processing

We need to be able to run batch runs of simulations to get enough results for statistical analysis.

• Parameter File Definition - We need a simple text file defined that allows for all the parameters in the simulation and sets of bacteria, particles and boundaries defined. It should look something like this:

dskl;fjsdl
sdlfkjsdlkf

Therefore,

• BSimBatch - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement.
• Blue Crystal Accounts - Contact university about getting accounts to run some larger scale simulations

BSim Simulations