Team:Paris/Modeling/Molecular Reactions

From 2008.igem.org

Revision as of 23:32, 26 October 2008 by Hugo (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Molecular Reactions

We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the Template:Blue is described. Each of those reactions has to be "mathematically interpreted", in a Template:Blue that accounts for the important phenomenon, and in the same time allows us to find Template:Blue every involved parameters.

see the steps of the system

   the modeling
   the protocol of characterization

The System we are studying is the "Core System" (see Network Design) that we can represent in the scheme just below, with all alternatives (pFlhDC/pTet ; TetR/EnvZ/OmpR^*) :

The Full System
The interaction surrounded in red (f5) is the one of the detailed example

Complexation Reactions

The double triangle (|><|) is a symbol for complexations :
means n₁ molecules of FlhDC complexed with a pFliA promoter

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FlhDC and FliA bind to pFliL :

Production Reactions

The double triangle (|><|) is a symbol for complexations :
means n₁ molecules of FlhDC complexed with a pFliA promoter

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FlhDC><pFliL and FliA><pFliL causes "production" of FP1 :

Degradation/Dilution Reactions

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

FP1 disappears because of its degradation and dilution :

for complete .pdf with all reactions and references : [list of reactions/equations]