Team:Paris/Modeling/Molecular Reactions

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Molecular Reactions


We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the Template:Blue is described. Each of those reactions has to be "mathematically interpreted", in a Template:Blue that accounts for the important phenomenon, and in the same time allows us to find Template:Blue every involved parameters.

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The system we are studying is the Template:Blue that we can represent in the scheme just below (with all alternatives pFlhDC or pTet and TetR or envZ or OmpR*)

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core system

The "core systeme"
* Every interactions are modelised by a ƒX function
* The detailed example FP1 = ƒ5([FlhDC],[FliA]) is surrounded in red
Complexation Reactions

The double triangle (|><|) is a symbol for complexations :
Compl.jpg means n1 molecules of FlhDC complexed with a pFliA promoter

 On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FlhDC and FliA bind to pFliL :

DCiLcompl.jpg

AiLcompl.jpg

Production Reactions

The double triangle (|><|) is a symbol for complexations :
Compl.jpg means n1 molecules of FlhDC complexed with a pFliA promoter

 On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FlhDC><pFliL and FliA><pFliL causes "production" of FP1 :



BFP1.jpg

Degradation/Dilution Reactions

On the Example :

How given amounts of FlhDC and FliA would produce FP1 ?

  • FP1 disappears because of its degradation and dilution :

DFP1.jpg


for complete .pdf with all reactions and references : [list of reactions/equations]
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