Team:Paris/Modeling/Roadmap

Calendar

July

• 07/31 - Have a full bibliography

August

• 08/07 - First model of the FIFO temporal order, of the backward control inducing the oscillations and of the synchronization between cells, using Biocham (or eventually Dizzy)
• 08/15 - Summary about the ODE method, Space introduction into models (AC, Delaunay)
• 08/22 - Feedback: list missing things (parameters), Optimization, Robustness analysis

September

• 09/22- Checkpoint meeting

October

• 10/15 - Scheduled wiki ending (2 weeks before the real ending to finish details)
• 10/31 - Official wiki ending (date to be checked)

Todo

Design a modular Matlab modelisation of our system

Using the following approach:

• 3 modules corresponding to the FIFO Temporal Order function, the Oscillation's one and the Sync function.
• Gather the 3 modules using a blackbox approach: each function is a box having its own inputs and outputs and does not interact with the others.
• Divide each box in smaller parts that we can quickly try in the wet lab to figure out precisely some missing parameters.

Implement the same models in BIOCHAM

It will allow easier:

• Exploration of the paramaters space
• Evalution of the robustness
• Changes (to a stochastic model for example)

MGS

• Understand the syntax!
• Develop a 3D model to simulate diffusion even if the medium will in fact be shook.