Team:BCCS-Bristol/Modeling-To Do List

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Modelling To Do List

GRN Modelling

BSim Framework Coding

  • Multi-threading Optimisations - Update the main computational classes to split up work into separate threads. Should improve performance when running on a single computer.
    • BSimChemicalField [Done] - Update class to use worker threads when calculating the new diffusion field.
    • BSimCollisionPhysics - Update class to use worker threads when calculating the force matrix.
  • Batch Processing - We need to be able to run batch runs of simulations to get enough results for statistical analysis.
    • Parameter File Definition -
    • BSimBatch - Class to read the parameter files and run a set number of simulations, outputting videos and a data file of particle movement.
    • Blue Crystal Accounts - Contact university about getting accounts to run some larger scale simulations


BSim Simulations


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