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Team:Edinburgh/Plan
From 2008.igem.org
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A chassis: E. coli vs. B. subtilis
We were initially torn between using Escherichia coli or Bacillus subtilis as a chassis for development of our system:
We decided that B. subtilis would have advantages in the case of our system working and industrialisation being an option. This was because of increased ease of transport (due to its stable spore-forming nature), its having a better characterised secretory system and being regarded in higher favour than E. coli by the general public (see section of ethical, legal and social implications).
However, for the labwork we decided to use E. coli JM109 as the chassis. This was due to the greater availability of tested registry parts for E. coli compared to B. subtilis, a higher level of understanding of the biochemistry of E. coli, and more in-house experience of engineering E. coli.
Primary Objective: The production of starch from cellulose
The production of starch from cellulose requires two main steps:
- Cellulolysis
- Starch synthesis: The glucose must be taken up by the cell and synthesised into glycogen, and then starch.
2. Starch synthesis
The first phase in synthesising starch make use of the chasis' native glycogen synthesis pathway. The gene glgC (ADP-glucose pyrophosphorylase, catalysing the convertion glucose 1-phosphate and ATP to ADP-glucose and PPi) is responsible for the most rate-limiting step of glycogen synthesis in E. coli. This is because the protein is negatively regulated by PPi. Carrying out the substitution 336:Gly->Asp to glgC has been reported to increase the yield of glycogen due to the loss allosteric inhibition. This mutated form of glgC is one of the BioBricks which we are in the process of making.
The second phase is the conversion of glycogen to starch. To achieve this we are creating isoamylase and granule-bound starch synthesase BioBricks (isa1, isa2 and gbss) from Zea mays cDNAs. These three genes together should be sufficient for the production of starch from glycogen.
3. Beta-carotene synthesis
Vitamin A deficiency results in night-blindness and an impaired immune system. A number of genes from Pantoea ananatis will be added to our bacterial cells, in essence transferring the beta-carotene synthesis pathway of P. ananatis to our chasis organism. These genes are crtE (geranyl diphosphate synthesase), crtB (phytoene synthase), crtI (phytoene desaturase) and crtY (lycopene beta-cyclase). We will also create BioBricks of the E. coli genes dxs and appY, the addition of which should increase the yield of beta-carotene.
System overview
