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Team:Heidelberg/Modeling/Chemotaxis
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Chemotaxis - Killing Model
Our detailed documentation "Model for Sensing Network and the Production of Colicins as the Killing Mechanism" includes the following information:
- Introduction into the biological sytem
- Chemotaxis model
- Parameter estimation
- Numerical methods
- Results
- Conclusions
You can download the documentation here and the summary of the modeling project can be downloaded here.
Simulation movies
Below is a list of simulation movies. Specific parameters can be taken from our documentation. 3D movies show the dynamics of all components of the system, while 2D movies show only the distribution of the bacterial strains. The 2D movies are ideally for seeing the killer cells spread over the area, while killing the prey strain.
- 4-PDEs with killer in corner and prey evenly distributed
- 3D
- 2D
- 5-PDEs with killer in corner and prey evenly distributed
- 3D
- 2D
- 5-PDEs with killer in corner and prey evenly distributed, but 1/1000 AI-2 production rate
- 3D
- 2D
- 5-PDEs with killer in corner and prey evenly distributed, but 4-fold chemotactic activity towards AI-2
- 3D
- 2D
- 5-PDEs with prey in center and killer evenly distributed around them
- 3D
- 2D
