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Team:BCCS-Bristol/Modeling-Software
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=== Reciever === | === Reciever === | ||
| - | [http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m '''Reciever GRN'''] | + | [http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m '''Reciever GRN'''] - Models the concentrations of mRNA and proteins for the reciever part of the GRN. |
[http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m '''Vary AHL concentration'''] - Shows levels of mCherry outputted by reciever when levels of AHL are varied. | [http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m '''Vary AHL concentration'''] - Shows levels of mCherry outputted by reciever when levels of AHL are varied. | ||
Revision as of 12:25, 29 October 2008
BSim
Pre-Compiled Versions
[http://2008sw.igem.org/bccs_bristol/bin/BSim.jar BSim.jar] (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)
Source Code
[http://2008sw.igem.org/bccs_bristol/src/BSim_Source.zip BSim Source Code] (zip file)
User Guide
Acknowledgements
- Werner Randelshofer ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class
- David J. Eisenberg (david@catcode.com) - PNGEncoder.java class
GRN Matlab Scripts
Sender
[http://2008sw.igem.org/bccs_bristol/src/GRN/sender.m Sender GRN] - Models the concentrations of mRNA and proteins for the sender part of the GRN.
[http://2008sw.igem.org/bccs_bristol/src/GRN/varyCpxR.m Vary CpxR concentration] - Shows levels of AHL outputted by sender when CpMax is varied.
Transport
[http://2008sw.igem.org/bccs_bristol/src/GRN/transport.m Transport] - Analyses how the concentration of a given chemical varies over time due to a diffusion process.
Reciever
[http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m Reciever GRN] - Models the concentrations of mRNA and proteins for the reciever part of the GRN.
[http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m Vary AHL concentration] - Shows levels of mCherry outputted by reciever when levels of AHL are varied.
