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Team:Heidelberg/Notebook/Visualization/Methods
From 2008.igem.org
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** Other substances like antibiotics (Amp, Kan, Cm) or inducer (IPTG, Arabinose) | ** Other substances like antibiotics (Amp, Kan, Cm) or inducer (IPTG, Arabinose) | ||
*Step 2: Your agar-media solution should be clear and the agar completely solved. ''If you want to use attractant plugs<sup>1</sup> or other non fluid attractants, go first through step 5 then back through 2,3,4 skip 5, further with 6 and so on...'' | *Step 2: Your agar-media solution should be clear and the agar completely solved. ''If you want to use attractant plugs<sup>1</sup> or other non fluid attractants, go first through step 5 then back through 2,3,4 skip 5, further with 6 and so on...'' | ||
| - | *Step 3: Take Take a 50 ml falcon pour 25 ml of your agar | + | *Step 3: Take Take a 50 ml falcon pour 25 ml of your agar containing media in it and add antibiotics or inducing substances. ''If no extra substances are needed just skip this step.'' |
*Step 4: Let your media polimerize. At least let it rest for 15/20 min. | *Step 4: Let your media polimerize. At least let it rest for 15/20 min. | ||
| - | *Step 5: Then add the attractant. e.g.: ''casamino acid | + | *Step 5: Then add the attractant. e.g.: ''a casamino acid solution'' |
*Step 6: | *Step 6: | ||
**Put the whole plate into a 4°C fridge for 12-16 hours to allow the attractant to build up a gradient. | **Put the whole plate into a 4°C fridge for 12-16 hours to allow the attractant to build up a gradient. | ||
| Line 494: | Line 494: | ||
''Next day:'' | ''Next day:'' | ||
*Step 7: Take your overnight culture. It should be at an OD of 0.4-0.6. Then take 1 ml of the bacteria suspension and centrifuge it for 10 minutes at 4,000 rpm. Resolve the pellet at 100 µl of the media you are using in the petri-dish. | *Step 7: Take your overnight culture. It should be at an OD of 0.4-0.6. Then take 1 ml of the bacteria suspension and centrifuge it for 10 minutes at 4,000 rpm. Resolve the pellet at 100 µl of the media you are using in the petri-dish. | ||
| - | *Step 8: Place | + | *Step 8: Place 3-6 µl of your purrified bacteria at the premarked spots on the petri-dish sample. |
| - | *Step 9: Put the whole plate into the incubator at ~30°C | + | *Step 9: Put the whole plate into the incubator at ~30°C and take a look at your plates after 24, 48 and 72 hours. ''Put the plates into a plastic bag like the small ones for the bench trash to protect the plates from running dry to fast.'' |
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| + | Attractans:<br> | ||
EXAMPLES:<br> | EXAMPLES:<br> | ||
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Revision as of 19:38, 28 October 2008
Contents |
Microscope
Small chamber
chemotactical activity
Large chamber
computer-assisted analysis
Swarm Assays
PROTOCOL FOR SWARM-PLATE CHEMOTAXIS AGAINST A POSSIBLE ATTRACTANT:
This protocol was created using petri-dishes. But every other chamber could be used as well.
- Step 1: Make sure you have everything ready to get started. You need:
- Petri-dishes. !!! sign your petri-dishes before You pour in the media. Also mark the spots where you want to set the attractant or attractant line and the bacteria. !!!
- 50 ml falcons
- 25 ml media containig 0.2%-0.3% Agar for every petri-dish.
- samples of the appropriate attractants. The concentration depends on several substance depending attributes.
- Other substances like antibiotics (Amp, Kan, Cm) or inducer (IPTG, Arabinose)
- Step 2: Your agar-media solution should be clear and the agar completely solved. If you want to use attractant plugs1 or other non fluid attractants, go first through step 5 then back through 2,3,4 skip 5, further with 6 and so on...
- Step 3: Take Take a 50 ml falcon pour 25 ml of your agar containing media in it and add antibiotics or inducing substances. If no extra substances are needed just skip this step.
- Step 4: Let your media polimerize. At least let it rest for 15/20 min.
- Step 5: Then add the attractant. e.g.: a casamino acid solution
- Step 6:
- Put the whole plate into a 4°C fridge for 12-16 hours to allow the attractant to build up a gradient.
- Make an overnight culture of the strains you want to test, use TB media and add inducing substances if something has to be induced.
Next day:
- Step 7: Take your overnight culture. It should be at an OD of 0.4-0.6. Then take 1 ml of the bacteria suspension and centrifuge it for 10 minutes at 4,000 rpm. Resolve the pellet at 100 µl of the media you are using in the petri-dish.
- Step 8: Place 3-6 µl of your purrified bacteria at the premarked spots on the petri-dish sample.
- Step 9: Put the whole plate into the incubator at ~30°C and take a look at your plates after 24, 48 and 72 hours. Put the plates into a plastic bag like the small ones for the bench trash to protect the plates from running dry to fast.
Attractans:
EXAMPLES:
