Team:University of Washington/Modeling

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You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
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{| style="color:Gold;background-color:#500050;border: none" cellpadding="4" cellspacing="5" border="5" width="99%" align="center"
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!align="center";style="border: none;" |[[Image:WashingtonColorSeal-21-clip.gif|50px]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington|<font color="gold">Home</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Team|<font color="gold">The Team</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Project|<font color="gold">The Project</font>]]
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!align="center"; style="border: #6b0c6a inset 3px;" |[[Team:University_of_Washington/Modeling|<font color="gold">Modeling</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Notebook|<font color="gold">Notebook</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Protocols|<font color="gold">Protocols</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Parts|<font color="gold">Parts Submitted <br>to the Registry</font>]]
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!align="center"; style="background-color:#03943d;border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Measurement Kit|<font color="gold">Measurement Kit</font>]]
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!align="center"; style="background-color:#c42317;border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/SeToB|<font color="gold">SeToB</font>]]
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!align="center"; style="border: #6b0c6a outset 3px;" |[[Team:University_of_Washington/Safety|<font color="gold">Safety</font>]]
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Here is the PDF for the UW iGem Modelling!
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[[Media:ModelingUW.pdf]]
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We would like to thank everyone that made iGem possible, as well as the advisors, professors, and staff that supported our team throughout the run.
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|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
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''
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Intro
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Technical notes:
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In equilibrium this portion of the Wiki will elucidate the modeling choices and serve as the resting place for the published models of the system.  The transitory response of this page will serve as a sort of blog detailing the high jinks, hiccups, and pertinent ideas explored during the team's run.
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The Goal
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The overall goal of the modeling process will be to accurately model the entire system, that is to say from input signaling molecules to conjugation. Our team has decided on two sets of inputs: Glucose(rather absence of glucose) and Lactose, and tetracycline and arabinose.  The output of these 'and gates' will be LuxR, which will bind with AHL (produced by Yeast) and will activate transcription of conjugation genes.  The AHL+LuxR complex serves as a second, cascaded 'and gate.' Ideally the models for individual circuit stages may be coupled together to form more complex and accurate models of the larger system.
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Why Model the System?
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Early Hangups:
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Technical Choices:
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Blog:
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Week1:
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Tell us more about your project.  Give us background.  Use this is the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
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|align="center"|[[Team:University_of_Washington | Team Example 2]]
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
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!align="center"|[[Team:University_of_Washington|Home]]
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!align="center"|[[Team:University_of_Washington/Team|The Team]]
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!align="center"|[[Team:University_of_Washington/Project|The Project]]
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!align="center"|[[Team:University_of_Washington/Parts|Parts Submitted to the Registry]]
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!align="center"|[[Team:University_of_Washington/Modeling|Modeling]]
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!align="center"|[[Team:University_of_Washington/Notebook|Notebook]]
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(''Or you can choose different headings.  But you must have a team page, a project page, and a notebook page.'')
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The PDF quality washed up some of the images, if you have trouble seeing them, request a .docx version of the paper from me (email below).
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===Note===
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The code for all simulations was done in Mathematica, and I will happily distribute it. Once again, email me!
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If you choose to include a '''Modeling''' page, please write about your modeling adventures here. This is not necessary but it may be a nice list to include.
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Tyler C.
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caseyt2@U.washington.edu

Latest revision as of 03:51, 30 October 2008

WashingtonColorSeal-21-clip.gif Home The Team The Project Modeling Notebook Protocols Parts Submitted
to the Registry 		Measurement Kit SeToB Safety

Here is the PDF for the UW iGem Modelling!

Media:ModelingUW.pdf

We would like to thank everyone that made iGem possible, as well as the advisors, professors, and staff that supported our team throughout the run.

Technical notes:

The PDF quality washed up some of the images, if you have trouble seeing them, request a .docx version of the paper from me (email below).

The code for all simulations was done in Mathematica, and I will happily distribute it. Once again, email me!

Tyler C. caseyt2@U.washington.edu

Retrieved from "http://2008.igem.org/Team:University_of_Washington/Modeling"