Edinburgh/18 September 2008

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'''[[Edinburgh/17_September_2008|< Previous Entry]] | [[Team:Edinburgh/Notebook|Notebook Index]] | [[Edinburgh/Week_15|Next Entry >]]'''
== Week 14 ==
== Week 14 ==
=== Thursday 18 September ~ Friday 19 September 08 ===
=== Thursday 18 September ~ Friday 19 September 08 ===
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* Sent M213, M218 (dxs+crtEBI) for sequencing. (AM)
+
* Sent M213, M218 (''dxs+crtEBI'') for sequencing. (AM)
* Single (EcoRI) and double (EcoRI+PstI) digests of:
* Single (EcoRI) and double (EcoRI+PstI) digests of:
-
** M198 (SOB2+zm1)
+
** M198 (SOB2+''SU1'')
-
** M201~203 (SOB2-rbs+zm1)
+
** M201~203 (SOB2-rbs+''SU1'')
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** M204~206 (SOB2+zm2)
+
** M204~206 (SOB2+''ISO2'')
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** M207~209 (SOB2-rbs+zm2). (Yan)
+
** M207~209 (SOB2-rbs+''ISO2''). (Yan)
-
* Single (PstI) digest of P97 (cex mut). (AM)
+
* Single (PstI) digest of P97 (''cex'' mut). (AM)
* M198~M206 run on '''Gel 80'''. All failed: single and double digests yielded the same results for all samples. (Yan)
* M198~M206 run on '''Gel 80'''. All failed: single and double digests yielded the same results for all samples. (Yan)
* M207~209 and P97 run on '''Gel 81'''. All failed: single and double digests yielded the same results for M207~209. PstI digest of P97 resulted in a smear. (AM)
* M207~209 and P97 run on '''Gel 81'''. All failed: single and double digests yielded the same results for M207~209. PstI digest of P97 resulted in a smear. (AM)
* Transformation/plating of CHU1727 failed twice. (CKL)
* Transformation/plating of CHU1727 failed twice. (CKL)
 +
 +
=== Follow-Up: Sequencing Results ===
 +
 +
* M212 is pSB1A2-''glgC16'' with desired prefix and suffix.
 +
* M213 is NOT ''dxs+crtEBI''. Both forward and reverse sequences indicate ''crtI''.
 +
* M218 is NOT ''dxs+crtEBI''. Forward sequence is dxs; reverse sequence is gibberish.

Latest revision as of 22:29, 29 October 2008

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Week 14

Thursday 18 September ~ Friday 19 September 08

  • Sent M213, M218 (dxs+crtEBI) for sequencing. (AM)
  • Single (EcoRI) and double (EcoRI+PstI) digests of:
    • M198 (SOB2+SU1)
    • M201~203 (SOB2-rbs+SU1)
    • M204~206 (SOB2+ISO2)
    • M207~209 (SOB2-rbs+ISO2). (Yan)
  • Single (PstI) digest of P97 (cex mut). (AM)
  • M198~M206 run on Gel 80. All failed: single and double digests yielded the same results for all samples. (Yan)
  • M207~209 and P97 run on Gel 81. All failed: single and double digests yielded the same results for M207~209. PstI digest of P97 resulted in a smear. (AM)
  • Transformation/plating of CHU1727 failed twice. (CKL)

Follow-Up: Sequencing Results

  • M212 is pSB1A2-glgC16 with desired prefix and suffix.
  • M213 is NOT dxs+crtEBI. Both forward and reverse sequences indicate crtI.
  • M218 is NOT dxs+crtEBI. Forward sequence is dxs; reverse sequence is gibberish.