From 2008.igem.org
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| |align=center|'''Band''' | | |align=center|'''Band''' |
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- | ! rowspan="5" style="background: #ccccff;" | D100 | + | ! rowspan="2" style="background: #ccccff;" | D100 |
- | ! rowspan="5" style="background: #ccccff;" | B0034 | + | ! rowspan="2" style="background: #ccccff;" | B0034 |
| |align=center|1 | | |align=center|1 |
| ! rowspan="2"| XbaI | | ! rowspan="2"| XbaI |
Revision as of 12:48, 29 July 2008
← Yesterday ↓ Calendar ↑Tomorrow →
MiniPreps
- Use of Promega's protocol on all the clones cultivated on the 25th.
- Preparation of 50µl of minipreps in double.
Name
| Biobrick
| Description
|
MP100
| B0034
| Strongest RBS (Efficiency = 1)
|
MP101
| J23101
| Strongest Constitutive promoter
|
MP102
| J23109
| Weak Constitutive promoter
|
MP103
| R0079
| promoter pLas (lasr & PAI regulated)
|
MP104
| R0040
| tetR repressible promoter
|
MP105
| S03154
| B0034(rbs) ->LasI
|
MP106
| S03879
| B0034(rbs) -> TetR
|
MP107
| C0079
| lasR activator with LVA Tag
|
MP108
| C0179
| lasR activator
|
MP109
| E0030
| YFP
|
MP110
| E0040
| GFP
|
MP111
| E1010
| mRFP
|
MP116
| J23100
| Strong constitutive promoter in J61002
|
MP117
| J23107
| Medium constitutive promoter in J61002
|
MP118
| B0015
| Double terminator
|
MP119
| I0500
| AraC pBAD
|
MP120
| B0030
| Strong RBS (Efficiency = 0,6)
|
MP121
| E0422
| ECFP (RBS+LVA+Term)
|
MP122
| E0840
| gfp tri-part; strong rbs
|
|
Digestion
Digestion Mix
10µl of Miniprep (26 aug.)
12.5µl of water
2.5µl of Buffer N°2
0.25µl of BSA 100x
1µl of enzyme 1
1µl of enzyme 2
- Incubation 1h at 37°C with the first enzyme
- Add the second enzyme
- Incubation 1h at 37°C with the second enzyme
- Store on ice
- Revelation of the digestion by electrophoresis on agarose gel
Results of digestions : Electrophoresis
conditions :
- 10µl of ladder 1 kb (except for gel n°6 : 100 pb)
- 30µl of digestion added with 5µl of loading Dye 6x
- migration ~30min at 100W
- Gel 1, 2, 3, 4, 5 = 0.8%
- Gel 6 = 1,5%
gel1
gel2
gel3
gel4
gel5
gel6
Name
| BioBrick
| Tube N°
| Enz 1
| Enz 2
| Obs
| Exp Size Matrix
| Exp Size BB
| Mea Size Matrix
| Mea Size BB
| Gel
| Band
|
D100
| B0034
| 1
| XbaI
| PstI
| BI
| 2057 pb
| 34 pb
| 1800 pb
| 40 pb
| 6
| 2
|
2
| 6
| 3
|
3
| EcoRI
| XbaI
| FV
| 2076 pb
| 15 pb
| 2000 pb
| -
| 1
| 2
|
4
| SpeI
| PstI
| BV
| 2077 pb
| 14 pb
| 2000 pb
| -
| 1
| 3
|
5
| 1
| 4
|
D101
| J23101
| 1
| SpeI
| PstI
| BV
| 2100 pb
| 883 pb
| 2000 pb
| 700 pb
| 1
| 5
|
2
| 1
| 6
|
D102
| J23109
| 1
| SpeI
| PstI
| BV
| 2100 pb
| 883 pb
| 2000 pb
| 700 pb
| 1
| 7
|
2
| 1
| 8
|
D103
| R0079
| 1
| SpeI
| PstI
| BV
| 2222 pb
| 14 pb
| 2000 pb
| -
| 1
| 9
|
2
| 1
| 10
|
D104
| R0040
| 1
| SpeI
| PstI
| BV
| 2119 pb
| 14 pb
| 2000 pb
| -
| 1
| 11
|
2
| 1
| 12
|
D105
| S03154
| 1
| SpeI
| PstI
| BV
| 2750 pb
| 14 pb
| 3000 pb
| -
| 2
| 5
|
2
| XbaI
| PstI
| BI
| 2057 pb
| 707 pb
| 2000 pb
| 700 pb
| 2
| 2
|
3
| 2
| 3
|
4
| EcoRI
| SpeI
| FI
| 2056 pb
| 708 pb
| 2000 pb
| 700 pb
| 2
| 4
|
D106
| S03879
| 1
| SpeI
| PstI
| BV
| 2768 pb
| 14 pb
| 2700 pb
| -
| 2
| 6
|
2
| XbaI
| PstI
| BI
| 2057 pb
| 725 pb
| 2000 pb
| 700 pb
| 2
| 7
|
3
| 2
| 8
|
4
| EcoRI
| SpeI
| FI
| 2756 pb
| 726 pb
| 3000 pb
| 700 pb
| 2
| 9
|
D107
| C0079
| 1
| EcoRI
| SpeI
| FI
| 4402 pb
| 779 pb
| 5000 pb
| 800 pb
| 2
| 10
|
2
| XbaI
| PstI
| BI
| 4003 pb
| 778 pb
| 5000 pb
| 800 pb
| 2
| 11
|
D108
| C0179
| 1
| EcoRI
| SpeI
| FI
| 4402 pb
| 746 pb
| 2000 pb
| 800 pb
| 2
| 12
|
2
| XbaI
| PstI
| BI
| 4403 pb
| 745 pb
| 2000 pb
| 800 pb
| 3
| 2
|
D109
| E0030
| 1
| EcoRI
| SpeI
| FI
| 3166 pb
| 746 pb
| 3000 pb
| 700 pb
| 3
| 3
|
2
| XbaI
| PstI
| BI
| 3167 pb
| 745 pb
| 3000 pb
| 700 pb
| 3
| 4
|
D110
| E0040
| 1
| EcoRI
| SpeI
| FI
| 2056 pb
| 743 pb
| 2000 pb
| 700 pb
| 3
| 5
|
2
| XbaI
| PstI
| BI
| 2057 pb
| 742 pb
| 2000 pb
| 700 pb
| 3
| 6
|
D111
| E1010
| 1
| EcoRI
| SpeI
| FI
| 4402 pb
| 704 pb
| 5000 pb
| 700 pb
| 3
| 7
|
2
| XbaI
| PstI
| BI
| 4403 pb
| 703 pb
| 5000 pb
| 700 pb
| 3
| 8
|
D116
| J23100
| 1
| SpeI
| PstI
| BV
| 2100 pb
| 883 pb
| 2000 pb
| 900 pb
| 3
| 9
|
2
| 3
| 10
|
D117
| J23107
| 1
| SpeI
| PstI
| BV
| 2100 pb
| 883 pb
| 2000 pb
| 900 pb
| 3
| 11
|
2
| 3
| 12
|
D118
| B0015
| 1
| EcoRI
| XbaI
| FV
| 3303 pb
| 15 pb
| 3000 pb
| -
| 4
| 2
|
2
| 4
| 3
|
D119
| I0500
| 1
| SpeI
| PstI
| FV
| 5621 pb
| 14 pb
| 6000 pb
| -
| 4
| 4
|
2
| 4
| 5
|
D120
| B0030
| 1
| XbaI
| PstI
| BI
| 2057 pb
| 37 pb
| 2000 pb
| 50 pb
| 6
| 4
|
2
| 6
| 5
|
3
| EcoRI
| XbaI
| FV
| 2079 pb
| 15 pb
| 2200 pb
| -
| 4
| 6
|
4
| SpeI
| PstI
| BV
| 2080 pb
| 14 pb
| 2000 pb
| -
| 4
| 7
|
5
| 4
| 8
|
D121
| E0422
| 1
| XbaI
| PstI
| BI
| 2057 pb
| 939 pb
| 2000 pb
| 1100 pb
| 4
| 9
|
2
| 4
| 10
|
3
| 4
| 11
|
D122
| E0
| 1
| XbaI
| PstI
| BI
| 2057 pb
| 900 pb
| 2000 pb
| 1000 pb
| 4
| 12
|
2
| 2000 pb
| 900 pb
| 5
| 2
|
3
| 5
| 3
|
==> conclusion : all the digestion have succeed.....GREAT !
- Cutting of the parts of interest, for all the digestion that have migrated on the gels
- Use of Promega's protocol for the extraction.
- Test of the succeed of the extraction by electrophoresis on 2µl of the parts extracted.
==> conclusion : we succeed to detect DNA in our samples this time.
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