- Here are the different codes used for our simulations
FIFO
- Code to Test the FIFO without FliA
- Code to Test the FIFO with FliA
Alternatives of the core system in BIOCHAM
%degradations
MA(gamma) for Flia => _.
MA(gamma) for FlhDC => _.
MA(gamma) for EnvZ => _.
%FlhDC action
MA(beta_Flia) for FlhDC => Flia + FlhDC.
MA(beta_EnvZ) for FlhDC => TetR + FlhDC.
%Flia action
MA(betap_Flia) for Flia => Flia + Flia.
MA(betap_EnvZ) for Flia => EnvZ + Flia.
%TetR action
beta_FlhDC*(theta_FlhDC^n)/(theta_FlhDC^n+[EnvZ]^n) for _ => FlhDC.
parameter(gamma,1).
parameter(beta_Flia,0.1429).
parameter(betap_Flia,0.8581).
parameter(beta_EnvZ,0.2222).
parameter(betap_EnvZ,0.7778).
parameter(beta_FlhDC,1).
parameter(theta_FlhDC,0.5).
parameter(n,4).
%Alternative 1
%parameter(beta_Flia,1).
%parameter(betap_Flia,0).
%Alternative 2
%parameter(beta_EnvZ,0).
%parameter(betap_EnvZ,1).
%Alternative 3
%parameter(theta_FlhDC,0.1)
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