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| - | {{:Team:KULeuven/Tools/Navigation_Bar}} | + | {{:Team:KULeuven/Tools/Styling}} |
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| - | [[Image:kulbanner.jpg|960px]]
| + | {{:Team:KULeuven/Tools/Header}} |
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| - | This page contains information on meetings and schedules, on practical stuff, and some suggestions on background reading.<br><br>Brainstorm ideas for the project have been moved to the '''[[Team:KULeuven/Brainstorm|brainstorm page]]'''.
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| - | <br><br> Spelen met de wiki doe je in de [[Team:KULeuven/Zandbak|zandbak]], vragen stellen of suggesties doen op de [[Team:KULeuven/Discussion|discussiepagina]].
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| - | = To do =
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| - | * check for international passport
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| - | * design a team t-shirt ('''Could someone check whether we can use Jan Fabre's Totem?''')
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| - | ** I have had a formal answer: ''"Spijtig genoeg kunnen wij u geen toelating geven voor de reproductie/adaptatie van het werk "Totem" van Jan Fabre als logo op t-shirts en websites."''
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| - | ** What are we going to do now? [[User:Bmoeyaert|Bmoeyaert]]
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| - | * book flights and hotel
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| - | = Meetings =
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| - | == May 22nd ==
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| - | students and instructors brainstorm @ ESAT 01.57
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| - | <br>
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| - | present: all students, SDK, LVA, YM, JR, GG, IT
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| - | * Each student [[Team:KULeuven/Project|presented]] his/her 3 favourite projects of previous iGEMs. All project brainstorm ideas are moved to the [[Team:KULeuven/Project|project page]]. There, you can add links to your favourite projects and/or upload your presentation.
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| - | * The group picture is on our [[Team:KULeuven/Team|team page]].
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| - | * Vote [[Team:KULeuven/Discussion|here]] for the logo you like best (thanks Jonas for the logo and Benjamien for the Zandbak and Discussiepagina idea!).
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| - | * To make a summer schedule, '''please indicate your holiday plans below''' (Practical stuff - Planned summer holidays). The last exam is on June 27th.
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| - | * Since the engineers want to see what's going on in the lab, and the biologists/bio-engineers want to learn about modeling, we'll organize some introductory tutorials in the beginning of the summer holidays.
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| - | * Put ideas and suggestions for the wiki [[Team:KULeuven/Discussion|here]].
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| - | * Inge will inform whether the students can stay at the Studentenwijk Arenberg during the summer holidays.
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| - | * You are all welcome to join the [http://www.kuleuven.be/bioscenter/ BioSCENTer launch event] (Wednesday 28th, Max Weber auditorium, Parkstraat 51). Our iGEM participation will be presented between 15.35 and 15.45.
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| - | * Check out the [http://www.kuleuven.be/bioscenter/igem iGEM website] at [http://www.kuleuven.be/bioscenter BioSCENTer].
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| - | <br>
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| - | * Good luck with the exams!
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| - | == June 30th ==
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| - | present: Benjamien, Hanne, Elke, Jan, Antoine, Dries, Nick, Stefanie, Jonas, Nathalie, Liesbeth, Sigrid, Astrid, Joris, Johan, Jos, Inge
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| - | <br>
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| - | <br>
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| - | '''getting started'''
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| - | * the students prepare tutorials and present these on '''Monday July 7th''' to the team (have a look at the teaching resources below for inspiration) --> '''room 00.210 of the LBI from 10h to 15h, we'll go to Alma at noon'''
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| - | ** introduction to synthetic biology (goal, examples...): Benjamien, Nathalie
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| - | ** basic molecular biology and gene technology: Hanne, Jonas --> [https://2008.igem.org/Team:KULeuven/Discussion#Intro_Moleculaire_Biologie_.26_Gentech_.28Hanne.2FJonas.29 '''Results''']
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| - | ** BioBricks (how to work with them - standard cloning procedures - measurement...): Elke, Jan
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| - | ** modeling (what for? how? eg. Matlab simbiology etc.) + iGEM modeling (go through last years modeling parts to get an idea of iGEM modeling): Maarten, Nick
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| - | * wet lab
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| - | ** the team will work in the CMPG labs
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| - | ** ensure lab guidance continuity
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| - | ** all students have lab coats
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| - | ** yet to decide how the costs will be arranged (also, do we order enzymes, disposables etc. especially for iGEM?)
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| - | * dry lab
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| - | ** a desktop pc will be installed in room 91.13 (internet available)
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| - | ** Jonas and Antoine explore the possibilities of the wiki (a.o. notebook, templates (eg. digest, PCR... cfr [http://parts.mit.edu/igem07/index.php/Going_through_our_wiki Paris 2007]), ...) --> [https://2008.igem.org/Team:KULeuven/Discussion#Wiki.2FNotebook.2F..._.28Jonas.2FAntoine.29 '''Results''']
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| - | ** during iGEM, everyone is responsible for the wiki
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| - | * meeting arrangements
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| - | ** room 91.13 of the LBI is reserved for iGEM for the whole summer holiday (not on Monday 12-13 and Thursday 12-13)--> ''to do: clean + writing board + check who has access'' - also room 00.210 is reserved till July 25th (in replacement of 00.42). This room has wireless internet. --[[User:Sigriddk|Sigriddk]] 10:02, 9 July 2008 (UTC)
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| - | ** weekly meeting at '''Friday from 12h to 14h in room 00.42 (except August of the LBI'''. You can order a sandwich by mailing to Inge before Thursday 16h. Students fill out the form by Thursday 16 (still have to put this online) - Put these in your agenda:
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| - | *** Friday July 18th (LBI Landbouwinstituut 00.42)
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| - | *** Friday July 25th (LBI 00.42)
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| - | *** Friday August 1st (LBI 00.42)
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| - | *** Friday August 8th (LBI 00.42)
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| - | *** '''Thursday''' August 14th (LBI 00.42)
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| - | *** Friday August 22nd (LBI TBA)
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| - | *** Friday August 29th (LBI TBA)
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| - | *** Friday September 5th (LBI TBA)
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| - | *** Friday September 12th (LBI TBA)
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| - | *** Friday September 19th (LBI 00.42)
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| - | * summer planning
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| - | ** week of June 30th to July 1st = "orientation week"
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| - | *** prepare tutorials
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| - | *** assess the possibility of the project ideas
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| - | *** check that we're not repeating previous years' work
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| - | *** fill in the details of the project (interesting BioBricks to use, adapt, make...)
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| - | *** ...
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| - | ** full speed iGEM from July 7th to September 19th
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| - | <br>
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| - | '''the project'''<br>
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| - | During orientation week, the timer project (PI control of drug production and timer for cell death) and the D project (with regulator and sRNA or with stable/unstable - gfp/TEV protease) will be assessed carefully (see the [[Team:KULeuven/Brainstorm|brainstorm page]] for an overview of these ideas).
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| - | <br><br>
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| - | '''things to think about'''<br>
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| - | * fund raising?
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| - | * contact press - which? (Hanne has connections at Het Nieuwsblad)
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| - | == July 7th ==
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| - | 10-15 in room 00.210 of the LBI<br>
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| - | Present: all students, IT, SDK, LVO, lab assistants<br>
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| - | '''meeting agenda'''<br>
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| - | * fill out werkpostfiches (insurance)
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| - | * distribute iGEM pins
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| - | * tutorials
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| - | ** 10: intro synthetic biology
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| - | ** 11: intro molecular biology and gene technology
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| - | ** 13: BioBricks (the CMPG people that will guide in the lab will attend this one)
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| - | ** 14: modeling
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| - | == July 8th ==
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| - | 9-17 in room 00.42 of the LBI<br>
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| - | Present: all students<br>
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| - | * continuation of the brainstorm
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| - | * searching for the right BioBricks
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| - | * inserting the BioBricks in the sandbox
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| - | * trying out cell designer
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| - | = Practical stuff =
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| - | nickvd: I propose to start working on the project the first week of July (read: Monday 7th). In that way we can get some rest after the exams, recharge our batteries so we can start working with a clear mind and full of motivation!
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| - | *That would be excellent, because I' m going to Werchter... So I'm available starting from Monday 7th --[[User:Hanne|Hanne]] 20:05, 22 May 2008 (UTC)
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| - | * I am also back on the 7th. --[[user:andim|Andim]]
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| - | * ...
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| - | Are there people that can start on Monday 30th of June or somewhere that week? For instance because they have few exams, don't like holidays... ;) For some BioBricks playing-around, preliminary testing, toy-modeling etc. --Inge
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| - | * My last exam is on the 25th... I'll have a headache for the first two days and then I would like to review certain things on PID-controllers and Matlab, so I figure I should be able to start soon. --[[User:Avdmeers|Antoine]]
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| - | * I can start the 3rd of July (and perhaps the 1st also) [[user:Bmoeyaert|Benjamien]]
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| - | * I should be able to start the 1st of July. [[user:BNathalie|Nathalie]]
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| - | * Normally I can also start the 30th of june [[user:Jotaro|Jan]]
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| - | * I don't mind messing about a bit that first week, so no problem for me [[user:Zeunas|Jonas]]
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| - | == Planned summer holidays==
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| - | * IT: August 2nd-17th
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| - | * [[User:Bmoeyaert|Benjamien]]: August 2nd-17th
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| - | * nickvd: no holiday plans, only moving plans the first week of July. I would also prefer to end somewhere around September 10th to get some rest before my thesis year.
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| - | * Stefanie: no holiday plans, only moving plans the first week of July.
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| - | * [[User:Hanne|Hanne]]: August 11th-17th, August 6th and a short minibreak.
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| - | * [[User:Zeunas|Jonas]]: I'm out of town September 15-21 and end of july (a little bit more precise now 21<sup>st</sup> of july till 1<sup>st</sup> of august), no other plans yet
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| - | * Elke: September 12th-19th
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| - | * [[User:Jotaro|Jan]]: In the beginning of september I'm probably expected to start in the lab with my thesis, but maybe I can also work a week for my thesis in august so I can also participate a week in IGEM in september. I'll try to arrange what fits with my promotor, but it's too early to say. I don't have holiday plans yet, but if there's a gap when there's no work for IGEM, I'll probably go on holiday :)
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| - | * [[User:BNathalie|Nathalie]]: I only planned something from June 28th until July 1st. So normally, I will be available all the time.
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| - | * [[User:maarten|maarten]]: no holiday plans so far, but like nick I would also prefer to end somewhere around September 10th so I can relax a bit before I start working on my thesis
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| - | * [[User:Avdmeers|Antoine]]: 3 short breaks in August, not planned yet though
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| - | *[[User:andim|Andim]]: June 24th- July7th I will be at home in Istanbul, then the weekend after I am not here.
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| - | * [[User:Dries|Dries]]: July 11, August 20th-31th
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| - | = Interesting reads =
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| - | <!-- biblio werkt nog niet <biblio> -->
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| - | <!-- #paper 1 pmid=10659857 -->
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| - | == Teaching resources ==
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| - | * [http://openwetware.org/wiki/Imperial_College/Courses/Spring2008/Synthetic_Biology Imperial College Introduction to Synthetic Biology Spring 2008]
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| - | * [http://openwetware.org/wiki/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals Imperial College Computer Modelling Practicals Spring 2008]
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| - | * [http://openwetware.org/wiki/Intertech:iSB2008 Valencia Introduction to Synthetic Biology 2008]
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| - | * [https://andersonlab.qb3.berkeley.edu/Tutorials/Computational_iGEM.html Berkeley course on Synthetic Biology]
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| - | * [http://www.openwetware.org/wiki/Harvard:Synthetic_Biology_Nanocourse/2007 Harvard Synthetic Biology Nanocourse 2007]
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| - | == Software resources ==
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| - | * [http://en.wikipedia.org/wiki/Wikipedia:Tutorial A wiki tutorial that can be very useful]
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| - | ** [http://www.mediawiki.org/wiki/Help:Contents MediaWiki Help Pages]
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| - | ** [http://en.wikipedia.org/wiki/Help:Contents Wikipedia Help Pages (more extensive than MediaWiki)]
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| - | * [http://sbml.org SBML]
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| - | * [http://www.systems-biology.org/cd/index.html CellDesigner]
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| - | == General ==
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| - | * [http://www.nature.com/nature/comics/syntheticbiologycomic/index.html synthetic biology comic]
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| - | * [http://gardnerlab.bu.edu/publications/Gardner.TS_PhDThesis_2000.pdf PhD thesis Timothy Gardner (toggle switch!)]
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| - | == iGEM and BioBricks ==
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| - | * [http://parts.mit.edu/wiki/index.php/Resources introductory resources on the iGEM competition]
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| - | * [http://partsregistry.org/wiki/index.php/Help:Team_experience_tutorial iGEM tutorial]
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| - | * [http://openwetware.org/wiki/IGEM:IMPERIAL/2006/project/Oscillator/Theoretical_Analyses example of an iGEM model - Imperial 2006]
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| - | * [http://parts.mit.edu/igem07/index.php/Taipei wiki of Taipei 2007, interesting links]
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| - | * [http://openwetware.org/wiki/IGEM:Projects_categorized all previous iGEM projects categorized, feel free to add]
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| - | <br>
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| - | * [http://partsregistry.org/Main_Page Registry of Standard Biological Parts]
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| - | * [http://partsregistry.org/Help:IGEM_08_DNA_distribution BioBricks 2008 spring distribution]
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| - | * [http://partsregistry.org/Measurement BioBricks measurement]
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| - | * [http://openwetware.org/wiki/Parts_characterization parts characterization]
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| - | * [http://partsregistry.org/wiki/index.php/Help:Contents BioBricks help]
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| - | <br>
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| - | * PMID 16978856: Chris Voigt 2006 review on synthetic biology parts (sensors, switches etc.) ! very useful to use in tutorials !
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| - | * PMID 18410688: BioBrick vectors
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| - | == Original research papers and reviews ==
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| - | * PMID 10659857
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| - | * PMID 10659856
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| - | * PMID 15858574
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| - | * PMID 17700541
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| - | * PMID 16330045
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| - | * PMID 18410688
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| - | * PMID 16306983
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| - | <!-- </biblio> -->
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"
