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Team:Heidelberg/Notebook/Sensing Group/Notebook/2ndweek
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* Fusion-PCR for Fusion-1 and repetition of PCR for LuxQ-2 and LuxQ | * Fusion-PCR for Fusion-1 and repetition of PCR for LuxQ-2 and LuxQ | ||
* digestion of pDK48 plasmid and Fusion-1 frament with NcoI/NdeI (0.5 µl) and AgeI (1 µl) in NEBuffer 4 | * digestion of pDK48 plasmid and Fusion-1 frament with NcoI/NdeI (0.5 µl) and AgeI (1 µl) in NEBuffer 4 | ||
| - | + | [[Image:HD 080813-LuxQ PCR-pDK48 mini LuxQ3 xbaI.png|left|thumb|500px|Fusion-PCR for Fusion-1, LuxQ PCR, LuxQ-2 PCR, pDK48 miniprep and xbaI digestion of LuxQ no. 3]] [[Image:HD 080813-F1 pDK48 Digestion.png|left|thumb|200px|Digestion of Fusion-1 and pDK48 with NcoI/NdeI/AgeI]] | |
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* Ligation of 5 µl Fusion-1 with 5 µl pDK48 (both digested with NcoI/NdeI ) | * Ligation of 5 µl Fusion-1 with 5 µl pDK48 (both digested with NcoI/NdeI ) | ||
| - | * Transformation into | + | * Transformation into DH5α (5 µl Ligation products) |
[[Team:Heidelberg/Notebook/Sensing_Group/Notebook/3rdweek | Go to 3rd week]] | [[Team:Heidelberg/Notebook/Sensing_Group/Notebook/3rdweek | Go to 3rd week]] | ||
Latest revision as of 14:02, 29 October 2008
Contents |
Monday, 08/11/2008
- preparation of LuxS harboring cells O/N culture
Tuesday, 08/12/2008
- Miniprep of correctly sequenced LuxS and Glycerol-stock
- LuxQ no. 3 checked via digestion with NcoI/BamHI (NEBuffer 3 + BSA) --> negative result
- PCR for LuxQ, LuxQ-1, LuxQ-2, Tar-1, Tar-2 with Taq Mastermix
- 5min @ 95°C || 30s @ 95°C | 30s @ 58 °C | 2min @ 72°C || 10min @ 72°C | 4°C hold (30 cycles)
- preparation of O/N culture for LuxQ no. 3
Wednesday, 08/13/2008
- PCR-purification of the all PCR-products eluted in 50 µl H2O
- Miniprep of LuxQ no. 3 O/N culture and digestion with xbaI (NEBuffer 2 + BSA)
- Fusion-PCR for Fusion-1 and repetition of PCR for LuxQ-2 and LuxQ
- digestion of pDK48 plasmid and Fusion-1 frament with NcoI/NdeI (0.5 µl) and AgeI (1 µl) in NEBuffer 4
Thursday, 08/14/2008
- Gel for LuxQ, LuxQ2
- sequentiell digestion of Fusion-1 with NcoI and NdeI (NEBuffer 3)
- Double digestion of pDK48 with NcoI/NdeI (NEBuffer 4)
Friday, 08/15/2008
- digestion of Fusion-1 with AgeI in NEBuffer 1
- gel extraction of sequentially digested Fusion-1 and pDK48 products
- new digestion of Fusion-1 with NcoI/NdeI (NEBuffer 4) and gel extraction, because previous digestion did not yield expected bands (there should be two small bands at 516bp and 392bp)
- Ligation of 5 µl Fusion-1 with 5 µl pDK48 (both digested with NcoI/NdeI )
- Transformation into DH5α (5 µl Ligation products)
