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Team:Freiburg/3D-Modeling
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== DNA-Origami == | == DNA-Origami == | ||
| - | Planning the input pattern on the DNA-Origami surface, we generated various 3D-models of the huge molecule using | + | Planning the input pattern on the DNA-Origami surface, we generated various 3D-models of the huge molecule using [http://www.nanoengineer-1.com/content/ NanoEngineer], [http://pymol.sourceforge.net/ Pymol] and [http://spdbv.vital-it.ch/ SwissPdbViewer] (both freeware). Some of those models are shown here to give you an impression of the molecules we have engineered this year.<br> |
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| - | [[Image:Freiburg08_DNA-NIP5.png|thumb|left|375 px|'''Fig.3:''' Oligo-pattern with scale and two fragments ]] | + | [[Image:Freiburg08_DNA-NIP5.png|thumb|left|375 px|'''Fig.3:''' Oligo-pattern with scale and two fragments (distance estimation model, distances given in Ångstrom)]] |
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| - | [[Image:Freiburg08_DNA-NIP8.png|thumb|left|780 px|'''Fig.4:''' Oligo-pattern with scale and two T-Cell-receptors ( | + | [[Image:Freiburg08_DNA-NIP8.png|thumb|left|780 px|'''Fig.4:''' Oligo-pattern with scale and two T-Cell-receptors (distance estimation model, distances given in Ångstrom)]] |
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== Fusion Proteins == | == Fusion Proteins == | ||
| - | The pictures below show models of the fusion proteins of our composite parts Bba_K157032 and Bba_K157033 code for (generated with "SwissPdbViewer"):<br> | + | The pictures below show models of the fusion proteins of our composite parts [http://partsregistry.org/wiki/index.php?title=Part:BBa_K157032 Bba_K157032] and [http://partsregistry.org/wiki/index.php?title=Part:BBa_K157033 Bba_K157033] code for (generated with "SwissPdbViewer"):<br> |
[[Image:Team-Freiburg2008_Lipo_alpha_nCFP.png|400 px]][[Image:Team-Freiburg2008_Lipo_alpha_link_cCFP.png|400 px]]<br> | [[Image:Team-Freiburg2008_Lipo_alpha_nCFP.png|400 px]][[Image:Team-Freiburg2008_Lipo_alpha_link_cCFP.png|400 px]]<br> | ||
'''Fig.6: Red:''' LipocalinFluA, '''Grey:''' "Transmembrane region (BCR, no structural data; symbolized by helix), '''Blue:''' '''left:''' Split-Cerulean (CFP), N-terminal fragment; '''right:''' Split-Cerulean (CFP), C-terminal fragment<br> | '''Fig.6: Red:''' LipocalinFluA, '''Grey:''' "Transmembrane region (BCR, no structural data; symbolized by helix), '''Blue:''' '''left:''' Split-Cerulean (CFP), N-terminal fragment; '''right:''' Split-Cerulean (CFP), C-terminal fragment<br> | ||
Latest revision as of 02:40, 30 October 2008
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_3D-modeling
DNA-OrigamiPlanning the input pattern on the DNA-Origami surface, we generated various 3D-models of the huge molecule using [http://www.nanoengineer-1.com/content/ NanoEngineer], [http://pymol.sourceforge.net/ Pymol] and [http://spdbv.vital-it.ch/ SwissPdbViewer] (both freeware). Some of those models are shown here to give you an impression of the molecules we have engineered this year.
Fusion ProteinsThe pictures below show models of the fusion proteins of our composite parts [http://partsregistry.org/wiki/index.php?title=Part:BBa_K157032 Bba_K157032] and [http://partsregistry.org/wiki/index.php?title=Part:BBa_K157033 Bba_K157033] code for (generated with "SwissPdbViewer"): |
