Team:KULeuven/Project

From 2008.igem.org

(Difference between revisions)
m
 
(168 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box! You can remove it from your pages once you have read and understood the alert *** -->
+
{{:Team:KULeuven/Tools/Styling}}
-
 
+
{{:Team:KULeuven/Tools/Header}}
-
<html>
+
__NOTOC__
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
== Dr. Coli, the bacterial drug delivery system ==
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
<div style="float:right"><html>
-
This is a template page. READ THESE INSTRUCTIONS.
+
<object width="250" height="250" >
 +
<param name="movie" value="docbl.swf">
 +
<embed src="https://static.igem.org/mediawiki/2008/c/ca/Docbl.swf" width="250" height="250" wmode="transparent">
 +
</embed>
 +
</object>
 +
</html>
</div>
</div>
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
Our team’s project is Dr. Coli, an ''E. coli'' bacterium that produces a drug when and where it is needed in the human body. It does this in an intelligent way, such that the drug production meets the individual patient’s needs. And when the patient is cured, Dr. Coli eliminates itself from the body. To achieve this, a molecular timer registers the time since the last disease signal sensed. Then after a certain time, Dr. Coli self-destructs. However, when the disease flares up again – above a certain noise level - the timer is reset and new drug is produced. Finally, the timer will not start counting during the production of Dr. Coli, thanks to its disease-memory.
-
You are provided with this team page template with which to start the iGEM season. You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki. You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You <strong>MUST</strong> have a team description page, a project abstract, a complete project description, and a lab notebook.  PLEASE keep all of your pages within your Team:Example namespace.
+
-
</div>
+
-
</div>
+
-
</html>
+
-
 
+
-
<!-- *** End of the alert box *** -->
+
-
 
+
-
 
+
-
 
+
-
{|align="justify"
+
-
|You can write a background of your team here. Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
+
-
|[[Image:Example_logo.png|200px|right|frame]]
+
-
|-
+
-
|
+
-
''Tell us more about your project. Give us background.  Use this is the abstract of your project. Be descriptive but concise (1-2 paragraphs)''
+
-
|[[Image:Team.png|right|frame|Your team picture]]
+
-
|-
+
-
|
+
-
|align="center"|[[Team:KULeuven | Team Example 2]]
+
-
|}
+
-
 
+
-
<!--- The Mission, Experiments --->
+
-
 
+
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
-
!align="center"|[[Team:KULeuven|Home]]
+
-
!align="center"|[[Team:KULeuven/Team|The Team]]
+
-
!align="center"|[[Team:KULeuven/Road Map|Road Map]]
+
-
!align="center"|[[Team:KULeuven/Project|The Project]]
+
-
!align="center"|[[Team:KULeuven/Parts|Parts Submitted to the Registry]]
+
-
!align="center"|[[Team:KULeuven/Modeling|Modeling]]
+
-
!align="center"|[[Team:KULeuven/Notebook|Notebook]]
+
-
|}
+
-
(''Or you can choose different headings. But you must have a team page, a project page, and a notebook page.'')
+
-
 
+
-
 
+
-
 
+
-
== '''Overall project''' ==
+
-
 
+
-
Your abstract
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
== Project Details==
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
=== Part 2 ===
+
-
 
+
-
 
+
-
 
+
-
 
+
-
=== The Experiments ===
+
Dr. Coli thus has several advantages over classical drugs, and, if proven successful, could have many medical applications. One example could be the delivery of a vasoactive intestinal peptide as a potential treatment for Crohn's disease.
 +
Within the time frame of the iGEM competition, we aim at delivering a proof of concept of Dr. Coli. For the input and output of the system, i.e. sensing the disease signal and producing the appropriate amount of drug, we use a dummy system. The most important assets of our proof of concept are the different control mechanisms. Since these are very much dependent on kinetic and other constants, Dr. Coli heavily relies on proper [https://2008.igem.org/Team:KULeuven/Model/Overview modeling].
 +
==Essential aspects of Dr. Coli==
 +
===Dr. Coli delivers drugs ''in situ''===
 +
<div class="floatleft">[[Image:pictogram_input.png|40px]]
 +
[[Image:pictogram_output.png|40px]]</div>
-
=== Part 3 ===
+
Dr. Coli produces a drug when it senses a certain disease signal in the human body. In our project, we replaced the input disease marker by a dummy [https://2008.igem.org/Team:KULeuven/Project/Input input] of anhydrotetracyclin. The proportional [https://2008.igem.org/Team:KULeuven/Project/Output output] drug production is mimicked with a fluorescent protein.
 +
===Dr. Coli self-destructs===
 +
<div class="floatleft">[[Image:pictogram_filter.png|40px]]
 +
[[Image:pictogram_inverter.png|40px]]</div>
 +
<div class="floatleft">[[Image:logo_reset.jpg|40px]]
 +
[[Image:pictogram_celldeath.png|40px]]</div>
 +
When the patient is cured, Dr. Coli is no longer needed and will eliminate itself from its host. Therefore, we placed an [https://2008.igem.org/Team:KULeuven/Project/Inverter inverter], a [https://2008.igem.org/Team:KULeuven/Project/Inverter molecular timer] and a [https://2008.igem.org/Team:KULeuven/Project/CellDeath cell death] mechanism in cascade. When no input signal is present, the inverter initiates the molecular timer, eventually leading to cell death. Upon renewed presence of the disease signal, the molecular timer is [https://2008.igem.org/Team:KULeuven/Project/Reset reset]. A [https://2008.igem.org/Team:KULeuven/Project/Filter filter], finally, ensures that the timer is not reset when only “noisy” disease signals  are sensed.
 +
===Dr. Coli in production===
 +
[[Image:pictogram_memory.png|40px|left]]
-
== Results ==
+
To enable the production of Dr. Coli without it self-destructing, we included a [https://2008.igem.org/Team:KULeuven/Project/Memory memory] device. This is a stable switch that is activated by the first input signal. Only from then on, the clock can start ticking towards cell death.

Latest revision as of 21:33, 3 October 2008

  dock/undock dropdown  

Dr. Coli, the bacterial drug delivery system

Our team’s project is Dr. Coli, an E. coli bacterium that produces a drug when and where it is needed in the human body. It does this in an intelligent way, such that the drug production meets the individual patient’s needs. And when the patient is cured, Dr. Coli eliminates itself from the body. To achieve this, a molecular timer registers the time since the last disease signal sensed. Then after a certain time, Dr. Coli self-destructs. However, when the disease flares up again – above a certain noise level - the timer is reset and new drug is produced. Finally, the timer will not start counting during the production of Dr. Coli, thanks to its disease-memory.

Dr. Coli thus has several advantages over classical drugs, and, if proven successful, could have many medical applications. One example could be the delivery of a vasoactive intestinal peptide as a potential treatment for Crohn's disease.

Within the time frame of the iGEM competition, we aim at delivering a proof of concept of Dr. Coli. For the input and output of the system, i.e. sensing the disease signal and producing the appropriate amount of drug, we use a dummy system. The most important assets of our proof of concept are the different control mechanisms. Since these are very much dependent on kinetic and other constants, Dr. Coli heavily relies on proper modeling.

Essential aspects of Dr. Coli

Dr. Coli delivers drugs in situ

Pictogram input.png Pictogram output.png

Dr. Coli produces a drug when it senses a certain disease signal in the human body. In our project, we replaced the input disease marker by a dummy input of anhydrotetracyclin. The proportional output drug production is mimicked with a fluorescent protein.

Dr. Coli self-destructs

Pictogram filter.png Pictogram inverter.png
Logo reset.jpg Pictogram celldeath.png

When the patient is cured, Dr. Coli is no longer needed and will eliminate itself from its host. Therefore, we placed an inverter, a molecular timer and a cell death mechanism in cascade. When no input signal is present, the inverter initiates the molecular timer, eventually leading to cell death. Upon renewed presence of the disease signal, the molecular timer is reset. A filter, finally, ensures that the timer is not reset when only “noisy” disease signals are sensed.

Dr. Coli in production

Pictogram memory.png

To enable the production of Dr. Coli without it self-destructing, we included a memory device. This is a stable switch that is activated by the first input signal. Only from then on, the clock can start ticking towards cell death.