Team:Paris/Modeling/BOB/Simulations/Codes
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{{Paris/Menu}} | {{Paris/Menu}} | ||
- | * Here are the different | + | * Here are the different codes used for our simulations |
+ | |||
= FIFO = | = FIFO = | ||
* Code to Test the FIFO without FliA | * Code to Test the FIFO without FliA | ||
- | [[Image:FIFO_avec_FliA_code.jpg | + | [[Image:FIFO_sans_FliA_code.jpg]] |
+ | |||
+ | * Code to Test the FIFO with FliA | ||
+ | |||
+ | [[Image:FIFO_avec_FliA_code.jpg]] | ||
+ | |||
+ | =Alternatives of the core system in BIOCHAM= | ||
+ | <code><pre> | ||
+ | %degradations | ||
+ | MA(gamma) for Flia => _. | ||
+ | MA(gamma) for FlhDC => _. | ||
+ | MA(gamma) for EnvZ => _. | ||
+ | |||
+ | %FlhDC action | ||
+ | MA(beta_Flia) for FlhDC => Flia + FlhDC. | ||
+ | MA(beta_EnvZ) for FlhDC => TetR + FlhDC. | ||
+ | |||
+ | %Flia action | ||
+ | MA(betap_Flia) for Flia => Flia + Flia. | ||
+ | MA(betap_EnvZ) for Flia => EnvZ + Flia. | ||
+ | |||
+ | %TetR action | ||
+ | beta_FlhDC*(theta_FlhDC^n)/(theta_FlhDC^n+[EnvZ]^n) for _ => FlhDC. | ||
+ | |||
+ | parameter(gamma,1). | ||
+ | parameter(beta_Flia,0.1429). | ||
+ | parameter(betap_Flia,0.8581). | ||
+ | parameter(beta_EnvZ,0.2222). | ||
+ | parameter(betap_EnvZ,0.7778). | ||
+ | parameter(beta_FlhDC,1). | ||
+ | parameter(theta_FlhDC,0.5). | ||
+ | parameter(n,4). | ||
+ | |||
+ | %Alternative 1 | ||
+ | %parameter(beta_Flia,1). | ||
+ | %parameter(betap_Flia,0). | ||
+ | |||
+ | %Alternative 2 | ||
+ | %parameter(beta_EnvZ,0). | ||
+ | %parameter(betap_EnvZ,1). | ||
+ | |||
+ | %Alternative 3 | ||
+ | %parameter(theta_FlhDC,0.1) | ||
+ | |||
+ | </pre></code> |
Latest revision as of 23:04, 29 October 2008
FIFO
Alternatives of the core system in BIOCHAM
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