Team:KULeuven/Road Map

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{|style="font color="#000000"; background-color:#ffffff; border-spacing:6px; text-align:center" width="960px"
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{{:Team:KULeuven/Tools/Styling}}
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven|<font color="#ffffff">Home</font>]]
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{{:Team:KULeuven/Tools/Scripting}}
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Team|<font color="#ffffff">The Team</font>]]
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{{:Team:KULeuven/Tools/Header}}
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Road Map|<font color="#ffffff">Road Map</font>]]
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Project|<font color="#ffffff">The Project</font>]]
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Parts|<font color="#ffffff">Parts Submitted to the Registry</font>]]
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Modeling|<font color="#ffffff">Modeling</font>]]
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!style="text-align:center; background-color:#003E81; border-width:0px; padding:3px;"|[[Team:KULeuven/Notebook|<font color="#ffffff">Notebook</font>]]
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|}
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[[Image:kulbanner.jpg|960px]]
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This page contains information on meetings and schedules, on practical stuff, and some suggestions on background reading.<br><br>Brainstorm ideas for the project have been moved to the '''[[Team:KULeuven/Brainstorm|brainstorm page]]'''.
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<br><br> Spelen met de wiki doe je in de [[Team:KULeuven/Zandbak|zandbak]], vragen stellen of suggesties doen op de [[Team:KULeuven/Discussion|discussiepagina]].
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= To do =
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* check for international passport
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* design a team t-shirt ('''Could someone check whether we can use Jan Fabre's Totem?''')
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* book flights and hotel
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<br><br>
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= Meetings =
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== May 22nd ==
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students and instructors brainstorm @ ESAT 01.57
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<br>
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present: all students, SDK, LVA, YM, JR, GG, IT
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* Each student [[Team:KULeuven/Project|presented]] his/her 3 favourite projects of previous iGEMs. All project brainstorm ideas are moved to the [[Team:KULeuven/Project|project page]]. There, you can add links to your favourite projects and/or upload your presentation.
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* The group picture is on our [[Team:KULeuven/Team|team page]].
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* Vote [[Team:KULeuven/Discussion|here]] for the logo you like best (thanks Jonas for the logo and Benjamien for the Zandbak and Discussiepagina idea!).
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* To make a summer schedule, '''please indicate your holiday plans below''' (Practical stuff - Planned summer holidays). The last exam is on June 27th.
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* Since the engineers want to see what's going on in the lab, and the biologists/bio-engineers want to learn about modeling, we'll organize some introductory tutorials in the beginning of the summer holidays.
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* Put ideas and suggestions for the wiki [[Team:KULeuven/Discussion|here]].
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* Inge will inform whether the students can stay at the Studentenwijk Arenberg during the summer holidays.
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* You are all welcome to join the [http://www.kuleuven.be/bioscenter/ BioSCENTer launch event] (Wednesday 28th, Max Weber auditorium, Parkstraat 51). Our iGEM participation will be presented between 15.35 and 15.45.
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* Check out the [http://www.kuleuven.be/bioscenter/igem iGEM website] at [http://www.kuleuven.be/bioscenter BioSCENTer].
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<br>
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* Good luck with the exams!
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== June 10th ==
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present: SDK, KM, AC, JR, LVO, IT
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'''Teachers workshop'''
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(Inge)<br>
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Tom Knight, Randy Rettberg and Meagan Lizarazo organised the Europe teachers workshop.
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I'll summarize the most important things:
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* They suggested this when choosing a project:
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** divide the project into subparts in such a way that the whole project does not fail if one subpart fails / aim for intermediate goals and aim further if remaining time allows
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** iGEM is about doing synthetic biology based on standard parts, not about freestyle synthetic biology, however great that can be
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* Matlab will sponsor!
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* [http://partsregistry.org/Measurement Measurement] is important - we received Jason's measurement kit by mail!
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* Over lunch, each instructor had to present his/her team [https://2008.igem.org/Europe_Teachers_Workshop/Team_reports short report].
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'''Project Brainstorm'''
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The ideas that came up are on the [[Team:KULeuven/Brainstorm|brainstorm page]].
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== June 17th ==
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present: SDK, KM, JVDL, YM, LVO, JR, AC, IT
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== June 23rd ==
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present: SDK, LVO, KM, JW, YM, JVDL, IT
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== June 30th ==
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This meeting will be in '''room 01.08''' instead of room 01.213 (CMPG, Landbouwinstituut).
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Please let me know if you cannot attend. The doodle for these meetings is [http://www.doodle.ch/d3mfvkme93p6n7th here]. If possible, it would be nice if most students could be at the meeting on the 30th. -[[User:Ingethijs|Ingethijs]]
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= Practical stuff =
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nickvd: I propose to start working on the project the first week of July (read: Monday 7th). In that way we can get some rest after the exams, recharge our batteries so we can start working with a clear mind and full of motivation!
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*That would be excellent, because I' m going to Werchter... So I'm available starting from Monday 7th --[[User:Hanne|Hanne]] 20:05, 22 May 2008 (UTC)
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* I am also back on the 7th. --[[user:andim|Andim]]
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* ...
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Are there people that can start on Monday 30th of June or somewhere that week? For instance because they have few exams, don't like holidays... ;) For some BioBricks playing-around, preliminary testing, toy-modeling etc. --Inge
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* My last exam is on the 25th... I'll have a headache for the first two days and then I would like to review certain things on PID-controllers and Matlab, so I figure I should be able to start soon. --[[User:Avdmeers|Antoine]]
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* I can start the 3rd of July (and perhaps the 1st also) [[user:Bmoeyaert|Benjamien]]
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* I should be able to start the 1st of July. [[user:BNathalie|Nathalie]]
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* Normally I can also start the 30th of june [[user:Jotaro|Jan]]
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* I don't mind messing about a bit that first week, so no problem for me [[user:Zeunas|Jonas]]
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== Planned summer holidays==
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* IT: August 2nd-17th
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* [[User:Bmoeyaert|Benjamien]]: August 2nd-17th
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* nickvd: no holiday plans, only moving plans the first week of July. I would also prefer to end somewhere around September 10th to get some rest before my thesis year.
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* Stefanie: no holiday plans, only moving plans the first week of July.
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* [[User:Hanne|Hanne]]: August 11th-17th, August 6th, and a short minibreak.
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* [[User:Zeunas|Jonas]]: I'm out of town September 15-21 and end of july, no other plans yet
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* Elke: September 12th-19th
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* [[User:Jotaro|Jan]]: In the beginning of september I'm probably expected to start in the lab with my thesis, but maybe I can also work a week for my thesis in august so I can also participate a week in IGEM in september. I'll try to arrange what fits with my promotor, but it's too early to say. I don't have holiday plans yet, but if there's a gap when there's no work for IGEM, I'll probably go on holiday :)
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* [[User:BNathalie|Nathalie]]: I only planned something from June 28th until July 1st. So normally, I will be available all the time.
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* [[User:maarten|maarten]]: no holiday plans so far, but like nick I would also prefer to end somewhere around September 10th so I can relax a bit before I start working on my thesis
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* [[User:Avdmeers|Antoine]]: 3 short breaks in August, not planned yet though
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*[[User:andim|Andim]]: June 24th- July7th I will be at home in Istanbul, then the weekend after I am not here.
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= Interesting reads =
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<!--  biblio werkt nog niet <biblio> -->
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<!-- #paper 1 pmid=10659857 -->
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== Teaching resources ==
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* [http://openwetware.org/wiki/Imperial_College/Courses/Spring2008/Synthetic_Biology Imperial College Introduction to Synthetic Biology Spring 2008]
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* [http://openwetware.org/wiki/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals Imperial College Computer Modelling Practicals Spring 2008]
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* [http://openwetware.org/wiki/Intertech:iSB2008 Valencia Introduction to Synthetic Biology 2008]
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== Software resources ==
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* [http://en.wikipedia.org/wiki/Wikipedia:Tutorial A wiki tutorial that can be very useful]
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* [http://sbml.org SBML]
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* [http://www.systems-biology.org/cd/index.html CellDesigner]
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== General ==
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* [http://www.nature.com/nature/comics/syntheticbiologycomic/index.html synthetic biology comic]
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== iGEM and BioBricks ==
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* [http://parts.mit.edu/wiki/index.php/Resources introductory resources on the iGEM competition]
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* [http://partsregistry.org/wiki/index.php/Help:Team_experience_tutorial iGEM tutorial]
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* [http://openwetware.org/wiki/IGEM:IMPERIAL/2006/project/Oscillator/Theoretical_Analyses example of an iGEM model - Imperial 2006]
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<br>
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* [http://partsregistry.org/Main_Page Registry of Standard Biological Parts]
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* [http://partsregistry.org/Help:IGEM_08_DNA_distribution BioBricks 2008 spring distribution]
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* [http://partsregistry.org/Measurement BioBricks measurement]
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* [http://openwetware.org/wiki/Parts_characterization parts characterization]
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<br>
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* PMID 16978856: Chris Voigt 2006 review on synthetic biology parts (sensors, switches etc.)
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* PMID 18410688: BioBrick vectors
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== Original research papers and reviews ==
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* PMID 10659857
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* PMID 10659856
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* PMID 15858574
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* PMID 17700541
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* PMID 16330045
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* PMID 18410688
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* PMID 16306983
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<!-- </biblio> -->
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Latest revision as of 15:42, 19 October 2008

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