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Team:ESBS-Strasbourg/Essential publications
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[[Team:ESBS-Strasbourg/Project|<= back]] | [[Team:ESBS-Strasbourg/Project|<= back]] | ||
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= '''Essential publications''' = | = '''Essential publications''' = | ||
<br> | <br> | ||
== Project essentials == | == Project essentials == | ||
| - | * ''Ajo-Franklin et al. Rational design of memory in eukaryotic cells. | + | * ''Caroline M. Ajo-Franklin et al. Rational design of memory in eukaryotic cells. (2007)'' PMID 17875664 |
| + | * ''Gudrun Bjornsdottir and Lawrence C. Myers. Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box. (2008)'' PMID 18385157 | ||
| + | * ''Christina B. Tyson et al. Dependency of size of Saccharomyces cerevisiae cells on growth rate. (1978)'' PMID 374379 | ||
<br> | <br> | ||
== Eukaryotic activation/repression domains == | == Eukaryotic activation/repression domains == | ||
| - | * | + | * ''Gemma Bellí et al. An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast. (1998)'' PMID 9461451 |
| + | * ''Jae-Ryeon Ryu et al. Cell-type specificity of short-range transcriptional repressors. (2001)'' PMID 11687630 | ||
| + | * ''Tania M. Malavé and Sharon Y.R. Dent. Transcriptional repression by Tup1-Ssn6. (2006)'' PMID 16936817 | ||
<br> | <br> | ||
| - | == Prokaryotic DNA binding domains == | + | == Prokaryotic DNA binding domains (+ affinity mutations) == |
| - | * | + | * ''Christian Berens and Wolfgang Hillen. Gene regulation by tetracyclines. Constraints of resistance regulation in bacteria shape TetR for application in eukaryotes. (2003)'' PMID 12869186 |
| + | * ''A. Wissmann et al. Amino acids determining operator binding specificity in the helix-turn-helix motif of Tn10 Tet repressor. (1991)'' PMID 1756721 | ||
<br> | <br> | ||
== Protein degradation motifs == | == Protein degradation motifs == | ||
| - | * | + | * ''Emily R. Hildebrandt and M. Andrew Hoyt. Cell cycle-dependent degradation of the Saccharomyces cerevisiae spindle motor Cin8p requires APC(Cdh1) and a bipartite destruction sequence. (2001)'' PMID 11694576 |
| + | * ''Janet L. Burton and Mark Solomon. D box and KEN box motifs in budding yeast Hsl1p are required for APC-mediated degradation and direct binding to Cdc20p and Cdh1p. (2001)'' PMID 11562348 | ||
| + | * ''Sofie R. Salama. G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover. (1994)'' PMID 7969135 | ||
| + | * ''Carolina Mateus and Simon V. Avery. Destabilized green fluorescent protein for monitoring dynamic changes in yeast gene expression with flow cytometry. (2000)'' PMID 11015728 | ||
<br> | <br> | ||
== Nuclear localistation == | == Nuclear localistation == | ||
| - | * | + | * ''Julia M. Sidorova et al. Cell cycle-regulated phosphorylation of Swi6 controls its nuclear localization. (1995)'' PMID 8590795 |
| + | * ''Michelle T. Harreman. Regulation of nuclear import by phosphorylation adjacent to nuclear localization signals. (2004)'' PMID 14998990 | ||
<br> | <br> | ||
== Site-specific proteases == | == Site-specific proteases == | ||
| - | * | + | * ''Sung Yun Kim et al. Abstract |
| + | In vivo determination of substrate specificity of hepatitis C virus NS3 protease: genetic assay for site-specific proteolysis. (2000)'' PMID 10933854 | ||
| + | * ''Hara Kang et al. An improved strategy for a genetic assay for site-specific proteolysis. (2001)'' PMID 11355710 | ||
<br> | <br> | ||
== mRNA instability == | == mRNA instability == | ||
| - | * | + | * ''Reut Shalgi et al. A catalog of stability-associated sequence elements in 3'UTRs of yeast mRNAs. (2005)'' PMID 16207357 |
<br> | <br> | ||
== BioBricks assembly == | == BioBricks assembly == | ||
| - | * ''Ira E. Philips | + | * ''Tom Knight. Idempotent Vector Design for Standard Assembly of Biobricks (2003)'' [http://web.mit.edu/synbio/release/docs/biobricks.pdf] |
| + | * ''Ira E. Philips and Pamels A. Silver. A New Biobrick Assembly Strategy Designed for Facile Protein Engineering (2006)'' [http://dspace.mit.edu/bitstream/handle/1721.1/32535/PhillipsSilverFusion.pdf?sequence=1] | ||
<br> | <br> | ||
== Toggle switches == | == Toggle switches == | ||
| - | * | + | * '' Timothy S. Gardner et al. Construction of a genetic toggle switch in Escherichia coli. (2000)'' PMID 10659857 |
<br> | <br> | ||
== Fluorescent proteins == | == Fluorescent proteins == | ||
| - | * | + | * ''Nathan C. Shaner et al. A guide to choosing fluorescent proteins. (2005)'' PMID 16299475 |
| - | + | ||
| - | + | ||
| - | + | ||
<br><br> | <br><br> | ||
<div id="bottom">{{Template:Team:ESBS-Strasbourg/Templates/Navigation}}</div> | <div id="bottom">{{Template:Team:ESBS-Strasbourg/Templates/Navigation}}</div> | ||
Revision as of 11:11, 7 August 2008
|
Essential publications
Project essentials
- Caroline M. Ajo-Franklin et al. Rational design of memory in eukaryotic cells. (2007) PMID 17875664
- Gudrun Bjornsdottir and Lawrence C. Myers. Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box. (2008) PMID 18385157
- Christina B. Tyson et al. Dependency of size of Saccharomyces cerevisiae cells on growth rate. (1978) PMID 374379
Eukaryotic activation/repression domains
- Gemma Bellí et al. An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast. (1998) PMID 9461451
- Jae-Ryeon Ryu et al. Cell-type specificity of short-range transcriptional repressors. (2001) PMID 11687630
- Tania M. Malavé and Sharon Y.R. Dent. Transcriptional repression by Tup1-Ssn6. (2006) PMID 16936817
Prokaryotic DNA binding domains (+ affinity mutations)
- Christian Berens and Wolfgang Hillen. Gene regulation by tetracyclines. Constraints of resistance regulation in bacteria shape TetR for application in eukaryotes. (2003) PMID 12869186
- A. Wissmann et al. Amino acids determining operator binding specificity in the helix-turn-helix motif of Tn10 Tet repressor. (1991) PMID 1756721
Protein degradation motifs
- Emily R. Hildebrandt and M. Andrew Hoyt. Cell cycle-dependent degradation of the Saccharomyces cerevisiae spindle motor Cin8p requires APC(Cdh1) and a bipartite destruction sequence. (2001) PMID 11694576
- Janet L. Burton and Mark Solomon. D box and KEN box motifs in budding yeast Hsl1p are required for APC-mediated degradation and direct binding to Cdc20p and Cdh1p. (2001) PMID 11562348
- Sofie R. Salama. G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover. (1994) PMID 7969135
- Carolina Mateus and Simon V. Avery. Destabilized green fluorescent protein for monitoring dynamic changes in yeast gene expression with flow cytometry. (2000) PMID 11015728
Nuclear localistation
- Julia M. Sidorova et al. Cell cycle-regulated phosphorylation of Swi6 controls its nuclear localization. (1995) PMID 8590795
- Michelle T. Harreman. Regulation of nuclear import by phosphorylation adjacent to nuclear localization signals. (2004) PMID 14998990
Site-specific proteases
- Sung Yun Kim et al. Abstract
In vivo determination of substrate specificity of hepatitis C virus NS3 protease: genetic assay for site-specific proteolysis. (2000) PMID 10933854
- Hara Kang et al. An improved strategy for a genetic assay for site-specific proteolysis. (2001) PMID 11355710
mRNA instability
- Reut Shalgi et al. A catalog of stability-associated sequence elements in 3'UTRs of yeast mRNAs. (2005) PMID 16207357
BioBricks assembly
- Tom Knight. Idempotent Vector Design for Standard Assembly of Biobricks (2003) [http://web.mit.edu/synbio/release/docs/biobricks.pdf]
- Ira E. Philips and Pamels A. Silver. A New Biobrick Assembly Strategy Designed for Facile Protein Engineering (2006) [http://dspace.mit.edu/bitstream/handle/1721.1/32535/PhillipsSilverFusion.pdf?sequence=1]
Toggle switches
- Timothy S. Gardner et al. Construction of a genetic toggle switch in Escherichia coli. (2000) PMID 10659857
Fluorescent proteins
- Nathan C. Shaner et al. A guide to choosing fluorescent proteins. (2005) PMID 16299475
