Team:Paris/Modeling/BOB/Simulations/Codes

From 2008.igem.org

(Difference between revisions)
(New page: {{Paris/Menu}} * Here are the different MatLab codes used for our simulations = FIFO = * Code to Test the FIFO without FliA '' beta=[1200/1450 150/450 100/450 50/350]; %% parameters valu...)
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= FIFO =
= FIFO =
* Code to Test the FIFO without FliA
* Code to Test the FIFO without FliA
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''
 
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beta=[1200/1450 150/450 100/450 50/350]; %% parameters value
 
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Tspan=[0:0.1:40]
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[[Image:FIFO_avec_FliA_code.jpg|1000px|center]]
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%% function to generate FlhDC evolution
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    function Y = step(T)
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        for i = 1:length(T)
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            if (T(i) < 20)
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                Y(i) = 1;
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            else
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                Y(i) = 0;
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            end
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        end
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    end
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%% function to set the equations
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    function Y = Vp(t,V)
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        Y(4,1)=0;
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        for i = 1:3
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            Y(i,1) = beta(i) * V(5) + ((1-beta(i)) * V(4)) - V(i);
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        end
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        Y(5,1) = step(t) - V(5);
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    end
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C0=zeros(5,1); %% initial conditions
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%% ODE solver
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[bar C]=ode23(@Vp,Tspan,C0);
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plot(Tspan,C)
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legend('CFP','YFP','RFP','FliA','FlhDC')
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end
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''
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* Code to Test the FIFO without FliA
+
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''
+
-
beta=[1200/1450 150/450 100/450 50/350]; %% parameters value
+
-
 
+
-
Tspan=[0:0.1:40]
+
-
 
+
-
 
+
-
%% function to generate FlhDC evolution
+
-
 
+
-
    function Y = step(T)
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-
        for i = 1:length(T)
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            if (T(i) < 20)
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                Y(i) = 1;
+
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            else
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                Y(i) = 0;
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            end
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        end
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    end
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%% function to set the equations
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    function Y = Vp(t,V)
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        for i = 1:4
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            Y(i,1) = beta(i) * V(5) + ((1-beta(i)) * V(4)) - V(i);
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        end
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        Y(5,1) = step(t) - V(5);
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    end
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C0=zeros(5,1); %% initial conditions
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%% ODE solver
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[bar C]=ode23(@Vp,Tspan,C0);
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plot(Tspan,C)
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legend('CFP','YFP','RFP','FliA','FlhDC')
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end''
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Revision as of 12:38, 2 September 2008

  • Here are the different MatLab codes used for our simulations

FIFO

  • Code to Test the FIFO without FliA
FIFO avec FliA code.jpg
Retrieved from "http://2008.igem.org/Team:Paris/Modeling/BOB/Simulations/Codes"