Team:Chiba/jk/β/weak 2
From 2008.igem.org
(Difference between revisions)
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>[[Team:Chiba/jk/β|送受信班]] | >[[Team:Chiba/jk/β|送受信班]] | ||
+ | ==Week 2== | ||
+ | ===24 August, 2008=== | ||
+ | :(22/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006) | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/digestion|Digestion test]]''' | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006) | ||
+ | |||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>5</td><td>6</td><td>7</td><td>8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007)</td> | ||
+ | <td>1</td><td>-</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006)</td> | ||
+ | <td>-</td><td>1</td><td>-</td><td>-</td> | ||
+ | </tr><tr> | ||
+ | <td>BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007)</td> | ||
+ | <td>-</td><td>-</td><td>1</td><td>-</td> | ||
+ | </tr><tr> | ||
+ | <td>BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007)</td> | ||
+ | <td>-</td><td>-</td><td>-</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>EcoRⅠ</td> | ||
+ | <td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 4</td> | ||
+ | <td>0.9</td><td>0.9</td><td>0.9</td><td>0.9</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>8</td><td>8</td><td>8</td><td>8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>10</td><td>10</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0824-1.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | :From left; | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) -> ? | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) -> OK | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) -> OK | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006) -> OK | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) -> OK | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) -> OK | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) -> OK | ||
+ | ::#BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006) -> None? | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0824-2.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>5~8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>9</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>2</td></tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>12</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | From the left; | ||
+ | (single digestuion) | ||
+ | ::5, BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) -> OK | ||
+ | ::6, BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) -> OK | ||
+ | ::7, BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) -> 3400bp:Bad, 2200bp:OK | ||
+ | ::8, BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006) -> OK | ||
+ | |} | ||
+ | |||
+ | ===25 August, 2008=== | ||
+ | :(24/8)--->'''[[Team:Chiba/protocol/digestion|Digestion]]''' | ||
+ | ::#Double Digestion:BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | ||
+ | ::#Double Digesiton:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) | ||
+ | ::#Single Digestion:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) | ||
+ | ::#BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) | ||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1</td><td>2</td><td>3</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>5</td><td>5</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>EcoRⅠ</td> | ||
+ | <td>0.5</td><td>o.5</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SpeⅠ</td> | ||
+ | <td>0.5</td><td>0.5</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 1</td> | ||
+ | <td>1</td><td>1</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>-</td><td>-</td><td>1</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>1</td><td>1</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>2</td><td>2</td><td>7.5</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>10</td><td>10</td><td>10</td><td>1</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | :--->[[Team:Chiba/protocol/gelcheck|Gel Check]] | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0825-1.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~3</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>10</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>2</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>-</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>12</td><td>6</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | :From right; | ||
+ | ::#Double Digestion:BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) -> OK | ||
+ | ::#Double Digesiton:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) -> ?(low) | ||
+ | ::#Single Digestion:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) -> ?(low) | ||
+ | ::#BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007) -> OK(low) | ||
+ | |} | ||
+ | |||
+ | |||
+ | --->[[Team:Chiba/protocol/digestion|Digestion]] | ||
+ | (Double Digestion) | ||
+ | ::#BBa_C0178[http://partsregistry.org/Part:BBa_C0178] | ||
+ | ::#BBa_C0170[http://partsregistry.org/Part:BBa_C0170] | ||
+ | ::#BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | ||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1</td><td>2</td><td>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>33ng/μl×60μl</td><td>33ng/μl×60μl</td><td>100ng/μl×20μl</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PstⅠ</td> | ||
+ | <td>2</td><td>2</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>XbaⅠ</td> | ||
+ | <td>2</td><td>2</td><td>-</td> | ||
+ | </tr>] | ||
+ | <td>SpeⅠ</td> | ||
+ | <td>-</td><td>-</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 2</td> | ||
+ | <td>-</td><td>-</td><td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>10</td><td>10</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>10</td><td>10</td><td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>16</td><td>16</td><td>16</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>100</td><td>100</td><td>52</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ===26 August, 2008=== | ||
+ | :(8/25)--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0825-2.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>6</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>36</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | ::1, BBa_C0178[http://partsregistry.org/Part:BBa_C0178] | ||
+ | :::Insert:609bp -> OK | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0825-3.JPG]] | ||
+ | | | ||
+ | ::2, BBa_C0170[http://partsregistry.org/Part:BBa_C0170] | ||
+ | :::Insert:609bp -> OK | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0825-4.JPG]] | ||
+ | | | ||
+ | ::3, BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | ||
+ | ::: -> OK | ||
+ | |} | ||
+ | |||
+ | |||
+ | --->'''[[Team:Chiba/protocol/ligation/gelex|Gel Extract]]''' | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/DNA Purification/zymocleam|Zymo Clean]]''' | ||
+ | :::#5μl | ||
+ | :::#5μl | ||
+ | :::#27μl | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0825-5.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>2</td></tr> | ||
+ | <tr> | ||
+ | <td>H2O</td> | ||
+ | <td>8</td></tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>12</td></tr> | ||
+ | </table> | ||
+ | |||
+ | :From left; | ||
+ | ::#insert:C0178 -> OK | ||
+ | ::#insert:C0170 -> OK? | ||
+ | ::#vector:J04500 -> OK | ||
+ | |} | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/ligation/dephosphorylation|SAP]]''' | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>26</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SAP</td> | ||
+ | <td>1</td></tr> | ||
+ | <tr> | ||
+ | <td>SAP Buffer</td> | ||
+ | <td>3</td></tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>30μL</td></tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/DNA Purification/zymocleam|Zymo Clean]]''' | ||
+ | :::Sample No.3->9μl | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0826.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No.3</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td></tr> | ||
+ | </table> | ||
+ | ::Sample No.3 -> OK ・・・30ng? | ||
+ | |} | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/ligation/ligation|Ligation]]''' | ||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>(1)</td><td>(2)</td><td>(3)</td><td>(4)</td><td>(5)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>insert①C0178</td> | ||
+ | <td>1</td><td>-</td><td>-</td><td>1</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>insert②C0170</td> | ||
+ | <td>-</td><td>1</td><td>-</td><td>-</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>vector③J04500</td> | ||
+ | <td>-</td><td>-</td><td>2</td><td>2</td><td>2</td> | ||
+ | </tr>] | ||
+ | <td>ligase</td> | ||
+ | <td>1</td><td>1</td><td>1</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer</td> | ||
+ | <td>2</td><td>2</td><td>2</td><td>2</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>6</td><td>6</td><td>5</td><td>4</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>10</td><td>10</td><td>10</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/transformation|Transformation]]''' | ||
+ | ::#insert①C0178 | ||
+ | ::#insert②C0170 | ||
+ | ::#vector③J04500 | ||
+ | ::#insert①C0178+vector③J04500 | ||
+ | ::#insert②C0170+vector③J04500 | ||
+ | |||
+ | |||
+ | |||
+ | ===27 August, 2008=== | ||
+ | [[Team:Chiba/protocol/digestion|Digestion Test]] | ||
+ | ::Sample DNA : BBa_R0010[http://partsregistry.org/Part:BBa_R0010] | ||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1</td><td>2</td><td>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PstⅠ</td> | ||
+ | <td>-</td><td>-</td><td>0.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>EcoRⅠ</td> | ||
+ | <td>-</td><td>0.5</td><td>0.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>-</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>-</td><td>-</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>-</td><td>7.5</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>1</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0827.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1</td><td>2</td><td>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>5</td><td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>H2O</td> | ||
+ | <td>4</td><td>-</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td><td>6</td><td>6</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | :From left;<br> | ||
+ | :#BBa_R0010 | ||
+ | :#Single Digestion | ||
+ | :#Double Digestion | ||
+ | |} | ||
+ | |||
+ | |||
+ | |||
+ | :(26/8)--->'''[[Team:Chiba/protocol/PCR|Colony-PCR]]''' | ||
+ | ::Colony PCR of 5 colonies from ligation plates (26/8-(4),(5)) and one from control plate(BBa_F2620[http://partsregistry.org/Part:BBa_F2620](2007)). | ||
+ | |||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">DNA Template</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dNTP mix</td> | ||
+ | <td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Foward Primer</td> | ||
+ | <td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Reverse Primer</td> | ||
+ | <td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>DNA polymerase</td> | ||
+ | <td>0.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Thermopol Buffer</td> | ||
+ | <td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>28.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>50μL</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | :95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃ | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0827-2.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample DNA</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>12</td></tr> | ||
+ | </table> | ||
+ | :From left;<br> | ||
+ | :1~5 insert:C0170 + vector:J04500 -> OK | ||
+ | :6 F2620・・Positive Control -> OK | ||
+ | :7~11 insert:C0178 + vector:J04500 -> OK | ||
+ | |} | ||
+ | |||
+ | |||
+ | :--->(28/8)'''[[Team:Chiba/protocol/DNA Purification/sigma|Miniprep]]''' | ||
+ | |||
+ | |||
+ | |||
+ | '''[[Team:Chiba/protocol/transformation|Transformation]]''' | ||
+ | :competent cells : XL10G | ||
+ | ::*BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062] | ||
+ | ::*BBa_C0062(2006) [http://partsregistry.org/Part:BBa_C0062] -> no colony on plates | ||
+ | ::*BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179] | ||
+ | ::*BBa_C0179(2006) [http://partsregistry.org/Part:BBa_C0179] | ||
+ | ::*BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156] | ||
+ | ::*BBa_S03156(2006) [http://partsregistry.org/Part:BBa_S03156] | ||
+ | ::*BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158] | ||
+ | ::*BBa_S03158(2006) [http://partsregistry.org/Part:BBa_S03158] | ||
+ | ::*BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160] | ||
+ | ::*BBa_S0316(2006) [http://partsregistry.org/Part:BBa_S03160] | ||
+ | |||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | ||
+ | |||
+ | |||
+ | :--->(29/8)'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | |||
+ | |||
+ | |||
+ | ===28 August, 2008=== | ||
+ | :(27/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]] | ||
+ | ::#insert:C0170 + vector:J04500 | ||
+ | ::#insert:C0178 + vector:J04500 | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/digestion|Digestion Test]]''' | ||
+ | ::#insert:C0170 + vector:J04500 | ||
+ | ::#insert:C0178 + vector:J04500 | ||
+ | |||
+ | <table width="500" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>3</td><td>4</td><td>5</td><td>6</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>insert:C0170 + vector:J04500 </td> | ||
+ | <td>1</td><td>-</td><td>1</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>insert:C0178 + vector:J04500 </td> | ||
+ | <td>-</td><td>1</td><td>-</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>EcoRⅠ</td> | ||
+ | <td>0.1</td><td>0.1</td><td>0.1</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SpeⅠ</td> | ||
+ | <td>-</td><td>-</td><td>0.1</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>1</td><td>1</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>-</td><td>-</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>7.8</td><td>7.8</td><td>6.8</td><td>6.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>10</td><td>10</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | |||
+ | :--->(29/8)'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0828.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1,2</td><td>3~6</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>H2O</td> | ||
+ | <td>4</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td><td>12</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | :From left; | ||
+ | ::# -> OK | ||
+ | ::# -> OK | ||
+ | ::# -> OK | ||
+ | ::# -> OK | ||
+ | ::# -> OK | ||
+ | ::# -> OK | ||
+ | |} | ||
+ | |||
+ | ===29 August, 2008=== | ||
+ | :--->'''[[Team:Chiba/protocol/digestion|Digestion Test]]''' | ||
+ | ::#BBa_R0010(2007) [http://partsregistry.org/Part:BBa_R0010] | ||
+ | ::#BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062] | ||
+ | ::#BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179] | ||
+ | ::#BBa_C0179(2006) [http://partsregistry.org/Part:BBa_C0179] | ||
+ | ::#BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156] | ||
+ | ::#BBa_S03156(2006) [http://partsregistry.org/Part:BBa_S03156] | ||
+ | ::#BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158] | ||
+ | ::#BBa_S03158(2006) [http://partsregistry.org/Part:BBa_S03158] | ||
+ | ::#BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160] | ||
+ | ::#BBa_S03160(2006) [http://partsregistry.org/Part:BBa_S03160] | ||
+ | |||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>S1~10</td><td>W1</td><td>W2~10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>4</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PstⅠ</td> | ||
+ | <td>-</td><td>0.075</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>EcoRⅠ</td> | ||
+ | <td>0.1</td><td>0.075</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>1</td><td>0.75</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>-</td><td>0.75</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>7.9</td><td>4.35</td><td>5.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>10</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No.</td> | ||
+ | <td>1~10</td><td>S1~S10,W1~W10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td><td>12</td></tr> | ||
+ | </table> | ||
+ | :From left;<br> | ||
+ | ::1~5,S1,S5,W1~W5 | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-2.JPG]] | ||
+ | | | ||
+ | :From left;<br> | ||
+ | ::6~10,S6~S10,W6~W10 | ||
+ | |} | ||
+ | |||
+ | |||
+ | |||
+ | :(27/8)--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-3.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample DNA</td> | ||
+ | <td>0.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>4.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6μL</td></tr> | ||
+ | </table> | ||
+ | |||
+ | ::R0010 -> OK | ||
+ | |} | ||
+ | |||
+ | |||
+ | '''[[Team:Chiba/protocol/digestion|Digestion]]''' | ||
+ | ::#BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] | ||
+ | ::#BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030] | ||
+ | ::#BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] | ||
+ | ::#BBa_R0010(2006) [http://partsregistry.org/Part:BBa_R0010] | ||
+ | |||
+ | |||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~3</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>100ng/μL×20</td><td>200ng/μL×30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PstⅠ</td> | ||
+ | <td>2</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>XbaⅠ</td> | ||
+ | <td>2</td><td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SpeⅠ</td> | ||
+ | <td>-</td><td>2</td></tr> | ||
+ | <tr> | ||
+ | <td>Buffer 2</td> | ||
+ | <td>-</td><td>5</td></tr> | ||
+ | <tr> | ||
+ | <tr> | ||
+ | <td>Buffer 3</td> | ||
+ | <td>5</td><td>-</td></tr> | ||
+ | <tr> | ||
+ | <td>BSA</td> | ||
+ | <td>5</td><td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>16</td><td>6</td></tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>50</td><td>50</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-4.JPG]] | ||
+ | | | ||
+ | <table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No.</td> | ||
+ | <td>1~3</td><td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>10</td><td>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>2</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>-</td><td>7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>12</td><td>12</td></tr> | ||
+ | </table> | ||
+ | |||
+ | :insert-I9026 : 685bp -> None<br> | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-5.JPG]] | ||
+ | | | ||
+ | :insert-I9030 : 745bp -> None<br> | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-6.JPG]] | ||
+ | | | ||
+ | :insert-S03154 : 685bp -> None<br> | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0829-7.JPG]] | ||
+ | | | ||
+ | :vector-R0010 : 2079bp -> OK<br> | ||
+ | |} | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/ligation/gelex|Gel Extract]]''' | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/DNA Purification/zymocleam|Zymo Clean]]''' | ||
+ | :::->15μL | ||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/ligation/dephosphorylation|SAP]]''' | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>15</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SAP</td> | ||
+ | <td>2</td></tr> | ||
+ | <tr> | ||
+ | <td>SAP Buffer</td> | ||
+ | <td>3</td></tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>10</td></tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>30μL</td></tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/DNA Purification/zymocleam|Zymo Clean]]''' | ||
+ | |||
+ | ::--->Suspension! (We got information, by the team-output, to the effect that the density of the sample is too low.) | ||
+ | |||
+ | |||
+ | ===30 August, 2008=== | ||
+ | :'''[[Team:Chiba/protocol/transformation|Transformation]]''' | ||
+ | :competent cells : XL10G | ||
+ | ::*BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026] | ||
+ | ::*BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030] | ||
+ | ::*BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154] | ||
+ | ::*BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156] | ||
+ | ::*BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158] | ||
+ | ::*BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160] | ||
+ | ::*BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062] | ||
+ | ::*BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179] | ||
+ | |||
+ | :--->(31/8)'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | ||
+ | |||
+ | |||
+ | |||
+ | :(29/8)--->'''[[Team:Chiba/protocol/DNA Purification/sigma|Mini prep]]''' | ||
+ | ::#insert:C0170 + vector:J04500 | ||
+ | ::#insert:C0178 + vector:J04500 | ||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/digestion|Digestion Test]]''' | ||
+ | ::*insert:C0170 + vector:J04500 -> Sample No.1~4 | ||
+ | ::*insert:C0178 + vector:J04500 -> Sample No.5~8 | ||
+ | ::*BBa_T9002(2007)[http://partsregistry.org/Part:BBa_T9002] -> Sample No.9 | ||
+ | ::*Single Digestion of Sample No.1~9 -> Sample No.10~18 | ||
+ | ::*Double Digestion of Sample No.1~9 -> Sample No.19~27 | ||
+ | |||
+ | :<table width="500" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="270">Sample No.</td><td>Single : 10~18</td><td>Double : 19~27</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td><td>1</td><td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>XbaⅠ</td><td>0.1</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SpeⅠ</td><td>-</td><td>0.1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Buffer 2</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>BSA</td><td>1</td><td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td><td>6.9</td><td>2.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | |||
+ | :--->'''[[Team:Chiba/protocol/gelcheck|Gel Check]]''' | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0830.JPG]] | ||
+ | | | ||
+ | :<table width="315" border="2" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
+ | <tr> | ||
+ | <td width="257">Sample No</td> | ||
+ | <td>1~9</td><td>10~18</td><td>19~27</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Sample DNA</td> | ||
+ | <td>1</td><td>10</td><td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Loading Dye</td> | ||
+ | <td>1</td><td>2</td><td>2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dH2O</td> | ||
+ | <td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr> | ||
+ | <td>TOTAL</td> | ||
+ | <td>6</td><td>12</td><td>12</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | :From left;<br> | ||
+ | ::Sanple No.1~13 | ||
+ | ::-> OK | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0830-2.JPG]] | ||
+ | | | ||
+ | :From left;<br> | ||
+ | ::Sample No.14~17,24~16 | ||
+ | ::14 -> OK | ||
+ | ::15,16 -> Bad | ||
+ | ::17 -> None | ||
+ | ::24~16 -> Bad | ||
+ | |} | ||
+ | {|align="justify" | ||
+ | |[[Image:Chiba-0830-3.JPG]] | ||
+ | | | ||
+ | :From left;<br> | ||
+ | ::Sample No.18,27,19~23 | ||
+ | ::18,27 -> Bad | ||
+ | ::19~22 -> OK | ||
+ | ::23 -> OK?? | ||
+ | |} | ||
{| style="color:white;background-color:Maroon" cellpadding="3" cellspacing="3" border="1" bordercolor="white" width="100%" align="center" | {| style="color:white;background-color:Maroon" cellpadding="3" cellspacing="3" border="1" bordercolor="white" width="100%" align="center" |
Revision as of 07:17, 20 September 2008
>送受信班
Contents |
Week 2
24 August, 2008
- (22/8)--->Mini prep
- BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007)
- BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006)
- BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007)
- BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006)
- --->Digestion test
- BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007)
- BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006)
- BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007)
- BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2006)
Sample No | 5 | 6 | 7 | 8 |
BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007) | 1 | - | - | - |
BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2006) | - | 1 | - | - |
BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) | - | - | 1 | - |
BBa_J13002[http://partsregistry.org/Part:BBa_J13002](2007) | - | - | - | 1 |
EcoRⅠ | 0.1 | 0.1 | 0.1 | 0.1 |
Buffer 4 | 0.9 | 0.9 | 0.9 | 0.9 |
dH2O | 8 | 8 | 8 | 8 |
TOTAL | 10 | 10 | 10 | 10 |
- --->Gel Check
|
25 August, 2008
- (24/8)--->Digestion
- Double Digestion:BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007)
- Double Digesiton:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007)
- Single Digestion:BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007)
- BBa_R0010[http://partsregistry.org/Part:BBa_R0010](2007)
Sample No | 1 | 2 | 3 | 4 |
Sample DNA | 5 | 5 | 1 | 1 |
EcoRⅠ | 0.5 | o.5 | - | - |
SpeⅠ | 0.5 | 0.5 | - | - |
Buffer 1 | 1 | 1 | - | - |
Buffer 3 | - | - | 1 | - |
BSA | 1 | 1 | - | - |
dH2O | 2 | 2 | 7.5 | - |
TOTAL | 10 | 10 | 10 | 1 |
- --->Gel Check
|
--->Digestion
(Double Digestion)
- BBa_C0178[http://partsregistry.org/Part:BBa_C0178]
- BBa_C0170[http://partsregistry.org/Part:BBa_C0170]
- BBa_J04500[http://partsregistry.org/Part:BBa_J04500](2007)
Sample No | 1 | 2 | 3 |
Sample DNA | 33ng/μl×60μl | 33ng/μl×60μl | 100ng/μl×20μl |
PstⅠ | 2 | 2 | 2 |
XbaⅠ | 2 | 2 | - | SpeⅠ | - | - | 2 |
Buffer 2 | - | - | 5 |
Buffer 3 | 10 | 10 | - |
BSA | 10 | 10 | 5 |
dH2O | 16 | 16 | 16 |
TOTAL | 100 | 100 | 52 |
26 August, 2008
- (8/25)--->Gel Check
|
|
|
--->Gel Extract
- --->Zymo Clean
- 5μl
- 5μl
- 27μl
- --->Gel Check
|
- --->SAP
Sample No 3 Sample DNA 26 SAP 1 SAP Buffer 3 TOTAL 30μL
- --->Zymo Clean
- Sample No.3->9μl
- --->Gel Check
Sample No.3 1 Loading Dye 1 dH2O 4 TOTAL 6 - Sample No.3 -> OK ・・・30ng?
- --->Ligation
Sample No (1) (2) (3) (4) (5) insert①C0178 1 - - 1 - insert②C0170 - 1 - - 1 vector③J04500 - - 2 2 2 ligase 1 1 1 1 1 </tr>
Buffer 2 2 2 2 2 dH2O 6 6 5 4 4 TOTAL 10 10 10 10 10
- --->Transformation
- insert①C0178
- insert②C0170
- vector③J04500
- insert①C0178+vector③J04500
- insert②C0170+vector③J04500
27 August, 2008
- Sample DNA : BBa_R0010[http://partsregistry.org/Part:BBa_R0010]
Sample No 1 2 3 Sample DNA 1 1 1 PstⅠ - - 0.5 EcoRⅠ - 0.5 0.5 Buffer 3 - 1 1 BSA - - 1 dH2O - 7.5 2 TOTAL 1 10 10
- --->Gel Check
Sample No 1 2 3 Sample DNA 1 5 5 Loading Dye 1 1 1 H2O 4 - - TOTAL 6 6 6 - From left;
- BBa_R0010
- Single Digestion
- Double Digestion
- From left;
- (26/8)--->Colony-PCR
- Colony PCR of 5 colonies from ligation plates (26/8-(4),(5)) and one from control plate(BBa_F2620[http://partsregistry.org/Part:BBa_F2620](2007)).
DNA Template 1 dNTP mix 5 Foward Primer 5 Reverse Primer 5 DNA polymerase 0.5 Thermopol Buffer 5 dH2O 28.5 TOTAL 50μL
- 95℃,5min -> ( 95℃,1min -> 52℃,1min -> 72℃,1min )・・・25cycles -> 72℃,10min -> 6℃
- --->Gel Check
Sample DNA 10 Loading Dye 2 TOTAL 12 - From left;
- 1~5 insert:C0170 + vector:J04500 -> OK
- 6 F2620・・Positive Control -> OK
- 7~11 insert:C0178 + vector:J04500 -> OK
- From left;
- --->(28/8)Miniprep
- competent cells : XL10G
- BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062]
- BBa_C0062(2006) [http://partsregistry.org/Part:BBa_C0062] -> no colony on plates
- BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179]
- BBa_C0179(2006) [http://partsregistry.org/Part:BBa_C0179]
- BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156]
- BBa_S03156(2006) [http://partsregistry.org/Part:BBa_S03156]
- BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158]
- BBa_S03158(2006) [http://partsregistry.org/Part:BBa_S03158]
- BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160]
- BBa_S0316(2006) [http://partsregistry.org/Part:BBa_S03160]
- --->Mini prep
- --->(29/8)Gel Check
28 August, 2008
- (27/8)--->Mini prep
- insert:C0170 + vector:J04500
- insert:C0178 + vector:J04500
- --->Digestion Test
- insert:C0170 + vector:J04500
- insert:C0178 + vector:J04500
Sample No 3 4 5 6 insert:C0170 + vector:J04500 1 - 1 - insert:C0178 + vector:J04500 - 1 - 1 EcoRⅠ 0.1 0.1 0.1 0.1 SpeⅠ - - 0.1 0.1 Buffer 3 1 1 1 1 BSA - - 1 1 dH2O 7.8 7.8 6.8 6.8 TOTAL 10 10 10 10
- --->(29/8)Gel Check
Sample No 1,2 3~6 Sample DNA 1 10 Loading Dye 1 2 H2O 4 - TOTAL 6 12 - From left;
- -> OK
- -> OK
- -> OK
- -> OK
- -> OK
- -> OK
- From left;
29 August, 2008
- --->Digestion Test
- BBa_R0010(2007) [http://partsregistry.org/Part:BBa_R0010]
- BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062]
- BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179]
- BBa_C0179(2006) [http://partsregistry.org/Part:BBa_C0179]
- BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156]
- BBa_S03156(2006) [http://partsregistry.org/Part:BBa_S03156]
- BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158]
- BBa_S03158(2006) [http://partsregistry.org/Part:BBa_S03158]
- BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160]
- BBa_S03160(2006) [http://partsregistry.org/Part:BBa_S03160]
Sample No S1~10 W1 W2~10 Sample DNA 1 4 2 PstⅠ - 0.075 0.1 EcoRⅠ 0.1 0.075 0.1 Buffer 3 1 0.75 1 BSA - 0.75 1 dH2O 7.9 4.35 5.8 TOTAL 10 10 10
- --->Gel Check
Sample No. 1~10 S1~S10,W1~W10 Sample DNA 1 10 Loading Dye 1 2 TOTAL 6 12 - From left;
- 1~5,S1,S5,W1~W5
- From left;
- From left;
- 6~10,S6~S10,W6~W10
- (27/8)--->Gel Check
Sample DNA 0.5 Loading Dye 1 dH2O 4.5 TOTAL 6μL - R0010 -> OK
- BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
- BBa_I9030(2007) [http://partsregistry.org/Part:BBa_I9030]
- BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
- BBa_R0010(2006) [http://partsregistry.org/Part:BBa_R0010]
Sample No 1~3 4 Sample DNA 100ng/μL×20 200ng/μL×30 PstⅠ 2 2 XbaⅠ 2 - SpeⅠ - 2 Buffer 2 - 5 Buffer 3 5 - BSA 5 5 dH2O 16 6 TOTAL 50 50 - --->Gel Check
Sample No. 1~3 4 Sample DNA 10 3 Loading Dye 2 2 dH2O - 7 TOTAL 12 12 - insert-I9026 : 685bp -> None
- insert-I9030 : 745bp -> None
- insert-S03154 : 685bp -> None
- vector-R0010 : 2079bp -> OK
- --->Gel Extract
- --->Zymo Clean
- ->15μL
- --->SAP
Sample No 4 Sample DNA 15 SAP 2 SAP Buffer 3 dH2O 10 TOTAL 30μL
- --->Zymo Clean
- --->Suspension! (We got information, by the team-output, to the effect that the density of the sample is too low.)
30 August, 2008
- Transformation
- competent cells : XL10G
- BBa_I9026(2007) [http://partsregistry.org/Part:BBa_I9026]
- BBa_I9030(2006) [http://partsregistry.org/Part:BBa_I9030]
- BBa_S03154(2007) [http://partsregistry.org/Part:BBa_S03154]
- BBa_S03156(2007) [http://partsregistry.org/Part:BBa_S03156]
- BBa_S03158(2007) [http://partsregistry.org/Part:BBa_S03158]
- BBa_S03160(2007) [http://partsregistry.org/Part:BBa_S03160]
- BBa_C0062(2007) [http://partsregistry.org/Part:BBa_C0062]
- BBa_C0179(2007) [http://partsregistry.org/Part:BBa_C0179]
- --->(31/8)Mini prep
- (29/8)--->Mini prep
- insert:C0170 + vector:J04500
- insert:C0178 + vector:J04500
- --->Digestion Test
- insert:C0170 + vector:J04500 -> Sample No.1~4
- insert:C0178 + vector:J04500 -> Sample No.5~8
- BBa_T9002(2007)[http://partsregistry.org/Part:BBa_T9002] -> Sample No.9
- Single Digestion of Sample No.1~9 -> Sample No.10~18
- Double Digestion of Sample No.1~9 -> Sample No.19~27
Sample No. Single : 10~18 Double : 19~27 Sample DNA 1 5 XbaⅠ 0.1 0.1 SpeⅠ - 0.1 Buffer 2 1 1 BSA 1 1 dH2O 6.9 2.8 TOTAL 10 10
- --->Gel Check
Sample No 1~9 10~18 19~27 Sample DNA 1 10 10 Loading Dye 1 2 2 dH2O 4 - - TOTAL 6 12 12 - From left;
- Sanple No.1~13
- -> OK
- From left;
- From left;
- Sample No.14~17,24~16
- 14 -> OK
- 15,16 -> Bad
- 17 -> None
- 24~16 -> Bad
- From left;
- Sample No.18,27,19~23
- 18,27 -> Bad
- 19~22 -> OK
- 23 -> OK??
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- --->Zymo Clean