Team:Paris/Modeling/BOB/Simulations/Codes

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(→Model Justification)
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[[Image:FIFO_avec_FliA_code.jpg]]
[[Image:FIFO_avec_FliA_code.jpg]]
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=Alternatives of the core system in BIOCHAM=
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<code><pre>
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%degradations
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MA(gamma) for Flia => _.
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MA(gamma) for FlhDC => _.
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MA(gamma) for TetR => _.
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%FlhDC action
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MA(beta_Flia) for FlhDC => Flia + FlhDC.
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MA(beta_TetR) for FlhDC => TetR + FlhDC.
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%Flia action
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MA(betap_Flia) for Flia => Flia + Flia.
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MA(betap_TetR) for Flia => TetR + Flia.
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%TetR action
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beta_FlhDC*(theta_FlhDC^n)/(theta_FlhDC^n+[TetR]^n) for _  => FlhDC.
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parameter(gamma,1).
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parameter(beta_Flia,0.1429).
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parameter(betap_Flia,0.8581).
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parameter(beta_TetR,0.2222).
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parameter(betap_TetR,0.7778).
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parameter(beta_FlhDC,1).
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parameter(theta_FlhDC,0.1).
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parameter(n,4).
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</pre></code>

Revision as of 22:51, 29 October 2008

  • Here are the different MatLab codes used for our simulations


FIFO

  • Code to Test the FIFO without FliA

FIFO sans FliA code.jpg

  • Code to Test the FIFO with FliA

FIFO avec FliA code.jpg

Alternatives of the core system in BIOCHAM

%degradations
MA(gamma) for Flia => _.
MA(gamma) for FlhDC => _.
MA(gamma) for TetR => _.

%FlhDC action
MA(beta_Flia) for FlhDC => Flia + FlhDC.
MA(beta_TetR) for FlhDC => TetR + FlhDC.

%Flia action
MA(betap_Flia) for Flia => Flia + Flia.
MA(betap_TetR) for Flia => TetR + Flia.

%TetR action
beta_FlhDC*(theta_FlhDC^n)/(theta_FlhDC^n+[TetR]^n) for _  => FlhDC.

parameter(gamma,1).
parameter(beta_Flia,0.1429).
parameter(betap_Flia,0.8581).
parameter(beta_TetR,0.2222).
parameter(betap_TetR,0.7778).
parameter(beta_FlhDC,1).
parameter(theta_FlhDC,0.1).
parameter(n,4).
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