FIFO

Code to Test the FIFO without FliA

Code to Test the FIFO with FliA

Alternatives of the core system in BIOCHAM

%degradations
MA(gamma) for Flia => _.
MA(gamma) for FlhDC => _.
MA(gamma) for TetR => _.

%FlhDC action
MA(beta_Flia) for FlhDC => Flia + FlhDC.
MA(beta_TetR) for FlhDC => TetR + FlhDC.

%Flia action
MA(betap_Flia) for Flia => Flia + Flia.
MA(betap_TetR) for Flia => TetR + Flia.

%TetR action
beta_FlhDC*(theta_FlhDC^n)/(theta_FlhDC^n+[TetR]^n) for _  => FlhDC.

parameter(gamma,1).
parameter(beta_Flia,0.1429).
parameter(betap_Flia,0.8581).
parameter(beta_TetR,0.2222).
parameter(betap_TetR,0.7778).
parameter(beta_FlhDC,1).
parameter(theta_FlhDC,0.1).
parameter(n,4).

Team:Paris/Modeling/BOB/Simulations/Codes

From 2008.igem.org

FIFO

Alternatives of the core system in BIOCHAM