Team:UNIPV-Pavia/Notebook/Week12

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Notebook



Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7
Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14



Week 11: 08/4/08 - 08/8/08

08/4/08

  • Plasmid digestion for:
BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006 (E-S) BBa_R0040 (E-X)
  • Gel run/cut/gel extraction.
  • Ligation: BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040. We incubated ligation at 16°C overnight.
  • We had 5 plates to screen with colony PCR:
    • BBa_B0030-BBa_C0051-BBa_B0030-BBa_C0079-BBa_B1006-BBa_R0051-BBa_B0030-BBa_C0062-BBa_B1006-BBa_R0062-BBa_B0030-BBa_E1010-BBa_B1006
    • BBa_B0030-BBa_C0061-BBa_B1006-BBa_R0062-BBa_B0030-BBa_E0040-BBa_B1006
    • BBa_B0030-BBa_C0078-BBa_B1006-BBa_R0079-BBa_B0030-BBa_E0040-BBa_B1006
    • BBa_B0030-BBa_C0061-BBa_B0030-BBa_C0079-BBa_B1006-BBa_R0079-BBa_B0030-BBa_E0040-BBa_B1006
    • BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040
  • Last week BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040 colony PCR gave a bad result. For this reason, we decided to perform colony PCR only for:
    • BBa_B0030-BBa_C0061-BBa_B1006-BBa_R0062-BBa_B0030-BBa_E0040-BBa_B1006 (7 colonies)
    • BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040 (6 colonies)
Marker 1Kb, blank, BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040 (6 colonies), BBa_B0030-BBa_C0061-BBa_B1006-BBa_R0062-BBa_B0030-BBa_E0040-BBa_B1006 (7 colonies)
  • Gel result:
    • BBa_B0030-BBa_C0061-BBa_B1006-BBa_R0062-BBa_B0030-BBa_E0040-BBa_B1006 (2nd colony)
    • BBa_J23100-BBa_B0030-BBa_C0040-BBa_B1006-BBa_R0040 (1st colony)