Team:Chiba/Calendar-Home/26 August 2008

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(Difference between revisions)

Latest revision as of 01:04, 30 October 2008

>Home | Notebook

25 August 2008 <|> 27 August 2008

Laboratory work

Team:Input

no work

Team:Communication

(8/25)--->Gel Check

Sample No.	1~3
Sample DNA(μL)	30
Loading Dye(μL)	6
TOTAL(μL)	36

1, BBa_C0178

Insert:609bp -> OK

2, BBa_C0170

Insert:609bp -> OK

3, BBa_J04500(2007)

--> OK

--->Gel Extract

--->Zymo Clean

eluted with following amount of elution buffer

5μl
5μl
27μl

--->Gel Check

Sample No.	1~3
Sample DNA(μL)	2
Loading Dye(μL)	2
H₂O(μL)	8
TOTAL(μL)	12

From left;

insert:BBa_C0178 --> OK
insert:BBa_C0170 --> OK?
vector:BBa_J04500 --> OK

--->SAP

Sample No.	3
Sample DNA(μL)	26
SAP(μL)	1
SAP Buffer(μL)	3
TOTAL(μL)	30

--->Zymo Clean

Sample No.3 -->9μl

--->Gel Check

Sample No.3	1
Loading Dye(μL)	1
dH₂O(μL)	4
TOTAL(μL)	6

Sample No.3 -> OK ･･･30ng?

--->Ligation

Sample No.	(1)	(2)	(3)	(4)	(5)
insert(1)BBa_C0178(μL)	1	-	-	1	-
insert(2)BBa_C0170(μL)	-	1	-	-	1
vector(3)BBa_J04500(μL)	-	-	2	2	2
ligase(μL)	1	1	1	1	1
Buffer(μL)	2	2	2	2	2
dH₂O(μL)	6	6	5	4	4
TOTAL(μL)	10	10	10	10	10

--->Transformation

insert(1)BBa_C0178
insert(2)BBa_C0170
vector(3)BBa_J04500
insert(1)BBa_C0178+vector(3)BBa_J04500
insert(2)BBa_C0170+vector(3)BBa_J04500

Team:Output

Gel Check

Sample No.	1	2	3
DNA tamplate	1	1	1
Loading Dye	1	1	1
dH₂O	4	4	4
TOTAL	6μl	6μl	6μl

Digestion

vector:BBa_F2620(1)

Sample No.	1
DNA tamplate	100
SpeI	2
PstI	2
BSA(x10)	13
Buffer2	13
TOTAL	130μl

insert:BBa_J52008(1)

BBa_E2030(2)

Sample No.	1	2
DNA tamplate	30	30
XbaI	1	1
PstI	1	1
DpnI	1	1
Buffer3	4	4
BSA(x10)	4	4
TOTAL	40μl	40μl

-->37°C　3hour
-->SAP
-->37°C 30min
-->65°C 15min
-->Zymo Clean

Ligation

vector:BBa_F2620 insert:BBa_J52008(1)
vector:BBa_F2620 insert:BBa_E2030(2)
Negative control:BBa_F2620(3)

Sample No.	1	2	3
vector	5	5	5
inser	10	7.5	0
Ligase Buffer	4	4	4
Ligase	1	1	1
dH₂O	0	2.5	10
TOTAL	20μl	20μl	20μl

-->RT 2hour

-->Transformation(XL10G)

-->37°C over night

-->colony PCR

-->Mini prep

@@ Line 150: / Line 150: @@
 </tr>
 <tr>
-<td>insert①C0178(μL)</td>
+<td>insert(1)[http://partsregistry.org/Part:BBa_C0178 BBa_C0178](μL)</td>
 <td>1</td><td>-</td><td>-</td><td>1</td><td>-</td>
 </tr>
 <tr>
-<td>insert②C0170(μL)</td>
+<td>insert(2)[http://partsregistry.org/Part:BBa_C0170 BBa_C0170](μL)</td>
 <td>-</td><td>1</td><td>-</td><td>-</td><td>1</td>
 </tr>
 <tr>
-<td>vector③J04500(μL)</td>
+<td>vector(3)[http://partsregistry.org/Part:BBa_J04500 BBa_J04500](μL)</td>
 <td>-</td><td>-</td><td>2</td><td>2</td><td>2</td>
 </tr>
@@ Line 181: / Line 181: @@
 :--->'''[[Team:Chiba/protocol/transformation|Transformation]]'''
-::#insert①[http://partsregistry.org/Part:BBa_C0178 BBa_C0178]
+::#insert(1)[http://partsregistry.org/Part:BBa_C0178 BBa_C0178]
-::#insert②[http://partsregistry.org/Part:BBa_C0170 BBa_C0170]
+::#insert(2)[http://partsregistry.org/Part:BBa_C0170 BBa_C0170]
-::#vector③[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
+::#vector(3)[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
-::#insert①[http://partsregistry.org/Part:BBa_C0178 BBa_C0178]+vector③[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
+::#insert(1)[http://partsregistry.org/Part:BBa_C0178 BBa_C0178]+vector(3)[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
-::#insert②[http://partsregistry.org/Part:BBa_C0170 BBa_C0170]+vector③[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
+::#insert(2)[http://partsregistry.org/Part:BBa_C0170 BBa_C0170]+vector(3)[http://partsregistry.org/Part:BBa_J04500 BBa_J04500]
 ===Team:Output===
 [[Team:Chiba/protocol/gelcheck|Gel Check]]
-*[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]
+*[http://partsregistry.org/Part:BBa_F2620 BBa_F2620](1)
-*[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]
+*[http://partsregistry.org/Part:BBa_F2620 BBa_F2620](2)
-*[http://partsregistry.org/Part:BBa_J63001 BBa_J63001]
+*[http://partsregistry.org/Part:BBa_J63001 BBa_J63001](3)
 <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000">
 <tr>
 <td width="257">Sample No.</td>
-<td>①</td><td>②</td><td>③</td><td>④</td><td>⑤</td>
+<td>1</td><td>2</td><td>3</td>
 </tr>
 <tr>
 <td>DNA tamplate</td>
-<td>1</td><td>1</td><td>1</td><td>1</td>><td>1</td>
+<td>1</td><td>1</td><td>1</td>
 </tr>
 <tr>
 <td>Loading Dye</td>
-<td>1</td><td>1</td><td>1</td><td>1</td><td>1</td>
+<td>1</td><td>1</td><td>1</td>
 </tr>
 <tr>
 <td>dH<sub>2</sub>O</td>
-<td>4</td><td>4</td><td>4</td><td>4</td><td>4</td>
+<td>4</td><td>4</td><td>4</td>
 </tr>
 <tr>
 <td>TOTAL</td>
-<td>6</td><td>6</td><td>6</td><td>6</td><td>6</td>
+<td>6μl</td><td>6μl</td><td>6μl</td>
 </tr>
 </table>
 [[Team:Chiba/protocol/digestion|Digestion]]
-*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]
+*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620](1)
 <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000">
 <tr>
 <td width="257">Sample No.</td>
-<td>[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]</td>
+<td>1</td>
 </tr>
 <tr>
@@ Line 228: / Line 228: @@
 </tr>
 <tr>
-<td>SpeⅠ</td>
+<td>SpeI</td>
 <td>2</td>
 </tr>
 <tr>
-<td>PstⅠ</td>
+<td>PstI</td>
 <td>2</td>
 </tr>
@@ Line 245: / Line 245: @@
 <tr>
 <td>TOTAL</td>
-<td>130</td>
+<td>130μl</td>
 </tr>
 </table>
-*insert:[http://partsregistry.org/Part:BBa_J52008 BBa_J52008],[http://partsregistry.org/Part:BBa_E2030 BBa_E2030]
+*insert:[http://partsregistry.org/Part:BBa_J52008 BBa_J52008](1)
+:[http://partsregistry.org/Part:BBa_E2030 BBa_E2030](2)
 <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000">
 <tr>
 <td width="257">Sample No.</td>
-<td>[http://partsregistry.org/Part:BBa_J52008 BBa_J52008]</td><td>[http://partsregistry.org/Part:BBa_E2030 BBa_E2030]</td>
+<td>1</td><td>2</td>
 </tr>
 <tr>
@@ Line 261: / Line 262: @@
 </tr>
 <tr>
-<td>XbaⅠ</td>
+<td>XbaI</td>
 <td>1</td><td>1</td>
 </tr>
 <tr>
-<td>PstⅠ</td>
+<td>PstI</td>
 <td>1</td><td>1</td>
 </tr>
 <tr>
-<td>DpnⅠ</td>
+<td>DpnI</td>
 <td>1</td><td>1</td>
 </tr>
@@ Line 282: / Line 283: @@
 <tr>
 <td>TOTAL</td>
-<td>40</td><td>40</td>
+<td>40μl</td><td>40μl</td>
 </tr>
 </table>
-<br>-->37℃　3hour
+<br>-->37°C　3hour
 <br>-->SAP
-<br>-->37℃ 30min
+<br>-->37°C 30min
-<br>-->65℃ 15min
+<br>-->65°C 15min
 <br>-->[[Team:Chiba/protocol/DNA_Purification/zymocleam|Zymo Clean]]
 [[Team:Chiba/protocol/ligation/ligation|Ligation]]
-*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620] insert:[http://partsregistry.org/Part:BBa_J52008 BBa_J52008]①
+*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620] insert:[http://partsregistry.org/Part:BBa_J52008 BBa_J52008](1)
-*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620] insert:[http://partsregistry.org/Part:BBa_E2030 BBa_E2030]②
+*vector:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620] insert:[http://partsregistry.org/Part:BBa_E2030 BBa_E2030](2)
-*Negative control:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620]③
+*Negative control:[http://partsregistry.org/Part:BBa_F2620 BBa_F2620](3)
 <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000">
 <tr>
 <td width="257">Sample No.</td>
-<td>①</td><td>②</td><td>③</td>
+<td>1</td><td>2</td><td>3</td>
 </tr>
 <tr>
@@ Line 324: / Line 325: @@
 <tr>
 <td>TOTAL</td>
-<td>20</td><td>20</td><td>20</td>
+<td>20μl</td><td>20μl</td><td>20μl</td>
 </tr>
 </table>
@@ Line 332: / Line 333: @@
 -->[[Team:Chiba/protocol/transformation|Transformation]](XL10G)
--->37℃ over night
+-->37°C over night
 -->colony PCR
 -->[[Team:Chiba/protocol/DNA_Purification/sigma|Mini prep]]