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Team:KULeuven/Project/Memory
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===Components=== | ===Components=== | ||
| - | [http://partsregistry.org/Part:BBa_C0052 '''BBa_C0052'''] is the cI repressor from phage 434, modified with an LVA-tag. It is placed under control of [http://partsregistry.org/Part:BBa_R0053 '''BBa_R0053'''], the phage P22 cII regulated promoter. [http://partsregistry.org/Part:BBa_C0053 '''BBa_C0053'''] codes for this | + | [http://partsregistry.org/Part:BBa_C0052 '''BBa_C0052'''] is the cI repressor from phage 434, modified with an LVA-tag. It is placed under control of [http://partsregistry.org/Part:BBa_R0053 '''BBa_R0053'''], the phage P22 cII regulated promoter. [http://partsregistry.org/Part:BBa_C0053 '''BBa_C0053'''] codes for this cII P22 repressor protein and is placed under control of a standardised right cI 434 promoter [http://partsregistry.org/Part:BBa_R1052 '''BBa_R1052''']. A third subdivision consists of the [http://partsregistry.org/Part:BBa_C0052 '''BBa_C0052'''] cI repressor from phage 434 under control of the TetR promoter ([http://partsregistry.org/Part:BBa_R0040 '''BBa_R0040''']). In this instance however, the cI 434 protein is '''not''' LVA-tagged. The fourth and last subdivision is an antisense LuxI mRNA (encoded by [http://partsregistry.org/Part:BBa_K145013 '''BBa_K145013''']) once again under control of the standardised right cI 434 promoter [http://partsregistry.org/Part:BBa_R1052 '''BBa_R1052''']. |
===Action=== | ===Action=== | ||
[[Image:Alt.png|500px|left]] | [[Image:Alt.png|500px|left]] | ||
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| - | When there is no signal from the input device, and there has never been one, no 434 cI repressor is made. This means that there is no repression of [http://partsregistry.org/Part:BBa_I12006 '''BBa_I12006'''], the | + | Now for how this memory device works. When there is no signal from the input device (through [http://partsregistry.org/Part:BBa_R0040 '''BBa_R0040'''], the TetR promoter), and there has never been one, the P22 c2 repressor will gain control over the system. P22 c2 and not 434 cI controls this OFF state because it has a lower K<sub>d</sub>, a stronger promoter ([http://partsregistry.org/Part:BBa_R1052 '''BBa_R1052'''] vs [http://partsregistry.org/Part:BBa_R0053 '''BBa_R0053''']) for its transcription and a more efficient RBS for its translation ([http://partsregistry.org/Part:BBa_B0031 '''BBa_B0031'''] vs [http://partsregistry.org/Part:BBa_B0033 '''BBa_B0033''']) than cI 434. This means that the synthesis of cI 434 ([http://partsregistry.org/Part:BBa_C0052 '''BBa_C0052'''], LVA-tagged) mRNA will be repressed from the c2 P22 regulated promoter. |
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| + | no 434 cI repressor is made. This means that there is no repression of [http://partsregistry.org/Part:BBa_I12006 '''BBa_I12006'''], the right 434 cI promoter. As a consequence of this, [http://partsregistry.org/Part:BBa_C0053 '''BBa_C0053'''], the phage 22 cII repressor is made, repressing [http://partsregistry.org/Part:BBa_R0053 '''BBa_R0053'''], the cII p22 regulated promoter. As said, [http://partsregistry.org/Part:BBa_I12006 '''BBa_I12006'''] is not repressed, and antisense LuxI ([http://partsregistry.org/Part:BBa_K145013 '''BBa_K145013''']) makes sure that no LuxI is transcribed, thereby preventing HSL production. | ||
From the moment an input signal emerges, the 434 cI repressor is made, repressing transcription of phage 22 cII repressor. This turns the phage 22 promoter on, resulting in further production of phage 434 cI repressor. Antisense LuxI production ceases, and LuxI begins producing HSL. | From the moment an input signal emerges, the 434 cI repressor is made, repressing transcription of phage 22 cII repressor. This turns the phage 22 promoter on, resulting in further production of phage 434 cI repressor. Antisense LuxI production ceases, and LuxI begins producing HSL. | ||
Revision as of 10:04, 1 September 2008
Contents |
Memory
BioBricks
Components
BBa_C0052 is the cI repressor from phage 434, modified with an LVA-tag. It is placed under control of BBa_R0053, the phage P22 cII regulated promoter. BBa_C0053 codes for this cII P22 repressor protein and is placed under control of a standardised right cI 434 promoter BBa_R1052. A third subdivision consists of the BBa_C0052 cI repressor from phage 434 under control of the TetR promoter (BBa_R0040). In this instance however, the cI 434 protein is not LVA-tagged. The fourth and last subdivision is an antisense LuxI mRNA (encoded by BBa_K145013) once again under control of the standardised right cI 434 promoter BBa_R1052.
Action
Now for how this memory device works. When there is no signal from the input device (through BBa_R0040, the TetR promoter), and there has never been one, the P22 c2 repressor will gain control over the system. P22 c2 and not 434 cI controls this OFF state because it has a lower Kd, a stronger promoter (BBa_R1052 vs BBa_R0053) for its transcription and a more efficient RBS for its translation (BBa_B0031 vs BBa_B0033) than cI 434. This means that the synthesis of cI 434 (BBa_C0052, LVA-tagged) mRNA will be repressed from the c2 P22 regulated promoter.
no 434 cI repressor is made. This means that there is no repression of BBa_I12006, the right 434 cI promoter. As a consequence of this, BBa_C0053, the phage 22 cII repressor is made, repressing BBa_R0053, the cII p22 regulated promoter. As said, BBa_I12006 is not repressed, and antisense LuxI (BBa_K145013) makes sure that no LuxI is transcribed, thereby preventing HSL production.
From the moment an input signal emerges, the 434 cI repressor is made, repressing transcription of phage 22 cII repressor. This turns the phage 22 promoter on, resulting in further production of phage 434 cI repressor. Antisense LuxI production ceases, and LuxI begins producing HSL.
From now on, phage 434 cI repressor accumulates and phage 22 cII inhibitor concentrations quickly drop to zero. This is nicely pictured on the modeling page of the memory system.
Input
Output
Filter
InverTimer
Reset
Cell Death
Memory
