Team:ESBS-Strasbourg/Links

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Links

General

  • [http://parts.mit.edu/igem08/index.php/Main_Page iGEM 08]
Essential page
  • [http://parts.mit.edu/registry/index.php/Main_Page BioBricks]
Bio-Bricks-Registry
  • [http://openwetware.org/wiki/Main_Page OpenWetWare]
Great source for everything concerning the (Wet)Lab
  • [http://openwetware.org/wiki/IGEM:Projects_categorized IGEM-Projects]
Overview of previous IGEM-Projects
  • [http://dbb.urmc.rochester.edu/labs/sherman_f/yeast/ Information about yeast]
Information about yeast

Synthetic biology

  • [http://syntheticbiology.org/ Syntheticbiology.org]
Syntheticbiology Community
  • [http://openwetware.org/wiki/Silver:_Protocols#Synthetic_Biology SilverLab]
Information about Synthetic Biology
  • [http://sb4.biobricks.org/ SB 4.0]
Famous conference about Synthetic Biology -This year in Hong Kong
  • [http://blog-msb.embo.org/blog/ The Seven Stones]
EMBO-Blog on Systems and Synthetic Biology
  • [http://larsjuhljensen.wordpress.com/ Buried Treasures]
Interesting blog on computational biology

Tools

  • [http://tools.invitrogen.com/content.cfm?pageid=9716 Invitrogen Primer Design]
Reference-Tool for Primer Design
  • [http://www.basic.northwestern.edu/biotools/oligocalc.html Tm-Calculator]/[http://www.pitt.edu/~rsup/OligoCalc.html Tm-Calculator2]
Tool for calculating the Melting-Temperature
  • [http://bioinfo.cnio.es/cgi-bin/sequences/blast/wwwblast2seq.cgi Blastn Sequence comparison]
To compare two sequences
  • [http://bionumbers.hms.harvard.edu/ BioNumbers]
DataBase of Numbers concerning Biology [http://openwetware.org/wiki/BioNumbers]
  • [http://www.kenkyuu.net/js/nacalc.html Nucleic Acids Calculator]
Calculator of concentration of DNA, important: numbers always in form of "1.5" and choose "dsDNA"

Tutorials

Modeling

  • [http://www.inf.ed.ac.uk/teaching/courses/mlcsb/ Resources on Computational Systems Biology from Edingburgh]


Wikis

Papers

  • Andrianantoandro E, Basu S, Karig DK, and Weiss R. Synthetic biology: new engineering rules for an emerging discipline. Mol Syst Biol 2006 PMID 16738572
  • Voigt CA. Genetic parts to program bacteria. Curr Opin Biotechnol 2006 Oct; 17(5) 548-57. PMID 16978856
  • Serrano L. Synthetic biology: promises and challenges. Mol Syst Biol 2007; 3 158. PMID 18091727
  • Drubin DA, Way JC, and Silver PA. Designing biological systems. Genes Dev 2007 Feb 1; 21(3) 242-54. PMID 17289915
  • Keasling JD. Synthetic biology for synthetic chemistry. ACS Chem Biol 2008 Jan 18; 3(1) 64-76 PMID 18205292
  • Savage DF, Way J, and Silver PA. Defossiling fuel: how synthetic biology can transform biofuel production. ACS Chem Biol 2008 Jan 18; 3(1) 13-6 PMID 18205286
  • Reguera G, McCarthy KD, Mehta T, Nicoll JS, Tuominen MT, and Lovley DR. Extracellular electron transfer via microbial nanowires. Nature 2005 Jun 23; 435(7045) 1098-101. PMID 15973408
  • Cho YK, Donohue TJ, Tejedor I, Anderson MA, McMahon KD, and Noguera DR. Development of a solar-powered microbial fuel cell. J Appl Microbiol 2008 Mar; 104(3) 640-50. PMID 17927750
  • Walter JM, Greenfield D, Bustamante C, and Liphardt J. Light-powering Escherichia coli with proteorhodopsin. Proc Natl Acad Sci U S A 2007 Feb 13; 104(7) 2408-12.PMID 17277079
  • Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, Chang IS, Kim BH, Kim KS, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, Shi L, Elias DA, Kennedy DW, Pinchuk G, Watanabe K, Ishii S, Logan B, Nealson KH, and Fredrickson JK. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proc Natl Acad Sci U S A 2006 Jul 25; 103(30) 11358-63. PMID 16849424
  • Stojanovic MN and Stefanovic D. A deoxyribozyme-based molecular automaton. Nat Biotechnol 2003 Sep; 21(9) 1069-74. PMID 12923549
  • Fu. A perspective of synthetic biology: assembling building blocks for novel functions. Biotechnol J (2006) vol. 1 (6) pp. 690-9 PMID 16892318
  • Sakaue-Sawano et al. Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell (2008) vol. 132 (3) pp. 487-98 PMID 18267078
  • Shetty et al. Engineering BioBrick vectors from BioBrick parts. J Biol Eng (2008) vol. 2 (1) pp. 5 PMID 18410688


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