User:Mjl

From 2008.igem.org

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(→Publications)
(→Publications)
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<ol class="references">
<ol class="references">
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<li id="cite_note-1">[http://www.ncbi.nlm.nih.gov/pubmed/11606204 PMID:11606204]</li>
+
<li id="cite_note-1">vanKuyk PA, de Groot MJ, Ruijter GJ, de Vries RP, and Visser J. The ''Aspergillus niger'' D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose. Eur J Biochem 2001 Oct; 268(20) 5414-23.[http://www.ncbi.nlm.nih.gov/pubmed/11606204 PMID:11606204]</li>
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<li id="cite_note-2">[http://www.ncbi.nlm.nih.gov/pubmed/12724380 PMID:12724380]</li>
+
<li id="cite_note-2">de Groot MJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Ruijter GJ, and Visser J. Isolation and characterization of two specific regulatory ''Aspergillus niger'' mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiology 2003 May; 149(Pt 5) 1183-91. [http://www.ncbi.nlm.nih.gov/pubmed/12724380 PMID:12724380]</li>
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<li id="cite_note-3">[http://www.ncbi.nlm.nih.gov/pubmed/12892473 PMID:12892473]</li>
+
<li id="cite_note-3">Prathumpai W, Gabelgaard JB, Wanchanthuek P, van de Vondervoort PJ, de Groot MJ, McIntyre M, and Nielsen J. Metabolic control analysis of xylose catabolism in ''Aspergillus''. Biotechnol Prog 2003 Jul-Aug; 19(4) 1136-41. doi:10.1021/bp034020r [http://www.ncbi.nlm.nih.gov/pubmed/12892473 PMID:12892473]</li>
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<li id="cite_note-4">[http://www.ncbi.nlm.nih.gov/pubmed/16321042 PMID:16321042]</li>
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<li id="cite_note-4">de Groot MJ, Prathumpai W, Visser J, and Ruijter GJ. Metabolic control analysis of ''Aspergillus niger'' L-arabinose catabolism. Biotechnol Prog 2005 Nov-Dec; 21(6) 1610-6. doi:10.1021/bp050189o [http://www.ncbi.nlm.nih.gov/pubmed/16321042 PMID:16321042]</li>
-
<li id="cite_note-5">[http://www.ncbi.nlm.nih.gov/pubmed/11606204 PMID:11606204]</li>
+
<li id="cite_note-5">van de Vondervoort PJ, de Groot MJ, Ruijter GJ, and Visser J. Selection and characterisation of a xylitol-derepressed ''Aspergillus niger'' mutant that is apparently impaired in xylitol transport. Appl Microbiol Biotechnol 2006 Dec; 73(4) 881-6. doi:10.1007/s00253-006-0527-y [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:16932954]</li>
-
<li id="cite_note-6">[http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:16932954]</li>
+
<li id="cite_note-7">de Groot MJL, van den Dool C, Wösten HAB, Levisson M, vanKuyk PA, Ruijter GJG, de Vries RP. Regulation of Pentose Catabolic Pathway Genes of ''Aspergillus niger'' Food Technol Biotechnol 2007; 42 134-138. http://www.ftb.com.hr/45-134.html
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<li id="cite_note-7">de Groot MJL, van den Dool C, Wösten HAB, Levisson M, vanKuyk PA, Ruijter GJG, de Vries RP. <i>Regulation of Pentose Catabolic Pathway Genes of <u>Aspergillus niger</u></i> Food Technol Biotechnol 2007; 42 134-138. http://www.ftb.com.hr/45-134.html
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<li id="cite_note-7">Daran-Lapujade P, Rossell S, van Gulik WM, Luttik MA, de Groot MJ, Slijper M, Heck AJ, Daran JM, de Winde JH, Westerhoff HV, Pronk JT, and Bakker BM. The fluxes through glycolytic enzymes in ''Saccharomyces cerevisiae'' are predominantly regulated at posttranscriptional levels. Proc Natl Acad Sci U S A 2007 Oct 2; 104(40) 15753-8. doi:10.1073/pnas.0707476104 [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17898166]</li>
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<li id="cite_note-8">[http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17898166]</li>
+
<li id="cite_note-8">de Groot MJ, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EA, Reinders MJ, Pronk JT, Heck AJ, and Slijper M. Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology 2007 Nov; 153(Pt 11) 3864-78. doi:10.1099/mic.0.2007/009969-0 [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17975095]</li>
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<li id="cite_note-9">[http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17975095]</li>
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<li id="cite_note-9">isbn=9085042518
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<li id="cite_note-10">isbn=9085042518
+
<!--/biblio -->
<!--/biblio -->

Revision as of 10:13, 22 October 2008

Contact Info

I work in the Department of Mediamatics, Information and Communication Theory Group section Bioinformatics at Delft Univesity of Technology.

Publications

  1. vanKuyk PA, de Groot MJ, Ruijter GJ, de Vries RP, and Visser J. The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose. Eur J Biochem 2001 Oct; 268(20) 5414-23.[http://www.ncbi.nlm.nih.gov/pubmed/11606204 PMID:11606204]
  2. de Groot MJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Ruijter GJ, and Visser J. Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiology 2003 May; 149(Pt 5) 1183-91. [http://www.ncbi.nlm.nih.gov/pubmed/12724380 PMID:12724380]
  3. Prathumpai W, Gabelgaard JB, Wanchanthuek P, van de Vondervoort PJ, de Groot MJ, McIntyre M, and Nielsen J. Metabolic control analysis of xylose catabolism in Aspergillus. Biotechnol Prog 2003 Jul-Aug; 19(4) 1136-41. doi:10.1021/bp034020r [http://www.ncbi.nlm.nih.gov/pubmed/12892473 PMID:12892473]
  4. de Groot MJ, Prathumpai W, Visser J, and Ruijter GJ. Metabolic control analysis of Aspergillus niger L-arabinose catabolism. Biotechnol Prog 2005 Nov-Dec; 21(6) 1610-6. doi:10.1021/bp050189o [http://www.ncbi.nlm.nih.gov/pubmed/16321042 PMID:16321042]
  5. van de Vondervoort PJ, de Groot MJ, Ruijter GJ, and Visser J. Selection and characterisation of a xylitol-derepressed Aspergillus niger mutant that is apparently impaired in xylitol transport. Appl Microbiol Biotechnol 2006 Dec; 73(4) 881-6. doi:10.1007/s00253-006-0527-y [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:16932954]
  6. de Groot MJL, van den Dool C, Wösten HAB, Levisson M, vanKuyk PA, Ruijter GJG, de Vries RP. Regulation of Pentose Catabolic Pathway Genes of Aspergillus niger Food Technol Biotechnol 2007; 42 134-138. http://www.ftb.com.hr/45-134.html
  7. Daran-Lapujade P, Rossell S, van Gulik WM, Luttik MA, de Groot MJ, Slijper M, Heck AJ, Daran JM, de Winde JH, Westerhoff HV, Pronk JT, and Bakker BM. The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels. Proc Natl Acad Sci U S A 2007 Oct 2; 104(40) 15753-8. doi:10.1073/pnas.0707476104 [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17898166]
  8. de Groot MJ, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EA, Reinders MJ, Pronk JT, Heck AJ, and Slijper M. Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology 2007 Nov; 153(Pt 11) 3864-78. doi:10.1099/mic.0.2007/009969-0 [http://www.ncbi.nlm.nih.gov/pubmed/16932954 PMID:17975095]
  9. isbn=9085042518

    Useful links

    • http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11606204,12724380,12892473,16321042,16932954,17898166,17975095
    • http://ict.ewi.tudelft.nl/index.php?option=com_contact&task=view&id=100
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