Team:TUDelft/Papers
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* Identification of genes for bacterial bioluminescence [http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=345387&blobtype=pdf] | * Identification of genes for bacterial bioluminescence [http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=345387&blobtype=pdf] | ||
* Group in Leiden working with the Soil Bacterium Streptomyces [http://wwwchem.gorlaeus.net/micdev/micdev_pages/vanwezel.html] | * Group in Leiden working with the Soil Bacterium Streptomyces [http://wwwchem.gorlaeus.net/micdev/micdev_pages/vanwezel.html] | ||
+ | |||
+ | === Modeling === | ||
+ | * Some papers on modeling regulation by small RNA | ||
+ | ** Quantitative characteristics of gene regulation by small RNA. Levine et al., September 2007 [http://biology.plosjournals.org/archive/1545-7885/5/9/pdf/10.1371_journal.pbio.0050229-L.pdf] | ||
+ | ** Regulation of gene expression by small non-coding RNAs: a quantitative view. Shimoni et al., August 2007 [http://www.nature.com/msb/journal/v3/n1/pdf/msb4100181.pdf] | ||
+ | ** Computational modeling of post-transcriptional gene regulation by microRNAs, Khanin et al., 2008 [http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2007.0184] | ||
+ | ** Bifurcations in the interplay of messenger RNA, protein and nonprotein coding RNA, Zhdanov, M [http://www.iop.org/EJ/article/1751-8121/41/28/285101/a8_28_285101.pdf?request-id=fda8e7bc-1319-441e-832d-0132cc42e83f] | ||
</div> | </div> | ||
{{Template:TUDelftiGEM2008_sidebar}} | {{Template:TUDelftiGEM2008_sidebar}} |
Revision as of 09:54, 14 July 2008
Temperature
- On database searching for thermo-sensitive RNA sequences
- Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers - Torsten Waldminghaus · Lena C. Gaubig · Franz Narberhaus - Mol Genet Genomics (2007) 278:555–564
- The NMR structure of a well known heat shock protein
- Molecular basis for temperature sensing by an RNA thermometer - Saheli Chowdhury, Christophe Maris, Frederic Allain and Franz Narberhaus - The EMBO Journal (2006) 25, 2487–2497
- Well more on RNA-translation regulation, so I thought let's post it.
- Engineered riboregulators enable post-transcriptional control of gene expression - G. Isaacs, D. Dqyer, C. Ding, D. Pervouchine, C. Cantor & J. Collins - Nature Biotechnology (2004) volume 7 number 22.
- A very recent review on RNA-translation regulation
- RNA switches regulate initiation of translation in bacteria - Stefano Marzi, Pierre Fechter, Cle´ment Chevalier, Pascale Romby and Thomas Geissmann - Biol. Chem., Vol. 389, pp. 585–598, May 2008
- A paper about RNA thermometers
- RNA thermometers - Narberhaus et al., May 2005 [1]
- Tuning the expression by altering the RNA sequence
- Design of 5'-untranslated region variants for tunable expression in Escherichia coli - Park et al., February 2007 [2]
- Papers about ROSE
- Some general papers
- Working thermosensor
- RNA Quadruplex-Based Modulation of Gene Expression - Wieland et al., June 2007 [9]
- Temperature perception in plants [10]
- RNA thermometer in salmonella
- FourU: a novel type of RNA thermometer in Salmonella - Waldminghaus, 2007 [11]
Color
- A general text on using micro-organisms for flavor production [12]
- The references page on the edinburgh 2007 wiki, several references on color and flavor are present [13]
- Two papers on Geosmin biosynthesis (an earthy odorant):
- Papers on plant volatile production:
- Rose Scent [18]
- Stable-light producing E. coli [19]
- Identification of genes for bacterial bioluminescence [20]
- Group in Leiden working with the Soil Bacterium Streptomyces [21]
Modeling
- Some papers on modeling regulation by small RNA
- Quantitative characteristics of gene regulation by small RNA. Levine et al., September 2007 [22]
- Regulation of gene expression by small non-coding RNAs: a quantitative view. Shimoni et al., August 2007 [23]
- Computational modeling of post-transcriptional gene regulation by microRNAs, Khanin et al., 2008 [24]
- Bifurcations in the interplay of messenger RNA, protein and nonprotein coding RNA, Zhdanov, M [25]