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Construction of pFlhB - mRFP Tripart (LVA+)
Aim : Construction of "pFlhB-RBS-mRFP-dbl ter" (pFlhB-I732078)    
We can only do the construction with mRFP Tripart (LVA+) because the stable strain with the Biobricks I732011 (mRFP Tripart LVA-) don't to growth.
Digestion
Measurement of the concentration of D187 purified
Protocol (it's same that for Miniprep)
| Digestion Name
| Concentration (µg/mL)
| Ratio 260/280
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| D187
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Ligation
Protocol
| Ligation Name
| Vector Name
| Volume Vector (µL)
| Insert
| Volume Insert (µL)
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| L1
| D187
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| D186
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| Control L1
| D187
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| -
| -
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Cloning of EnvZ* in pSB1A2
Transformation results
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| control
| insert / vector mass ratio
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| transformation with pUC19
| transformation without plasmid
| ligation without insert
| 1,8 / 1
| 2,4 / 1
| 3,1 / 1
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| number of colonies
| many
| 0
| 0
| 8
| 6
| 2
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| number of clones picked up for screening
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| 4
| 2
| 2
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PCR screening
- screening programm
- elongation time: 2 min
- number of cycle: 24
- total volume reaction: 25 µL
- primers used: O18 and O19
- positive control: S158 (pSB3K3)
- negative control: no template
Electrophoresis
| well n°
| 1
| 2
| 3
| 4
| 5
| 6
| 7
| 8
| 9
| 10
| 11
| 12
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| sample
| 1 kb DNA ladder
| positive control
| negative control
| EnvZ*-pSB1A2 ligation
| 100 bp DNA ladder
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| clone
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| 1
| 2
| 3
| 4
| 5
| 6
| 7
| 8
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| expected size
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| 1659 bp
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| measured size
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| below 0,3 kb
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No correct clone
The 8 other clones were also screened.
PCR
elongation time: 2 min 30
Electrophoresis
| well n°
| 1
| 2
| 3
| 4
| 5
| 6
| 7
| 8
| 9
| 10
| 11
| 12
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| sample
| 1 kb DNA ladder
| positive control
| negative control
| EnvZ*-pSB1A2 ligation
| 100 bp DNA ladder
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| clone
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| 9
| 10
| 11
| 12
| 13
| 14
| 15
| 16
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| expected size
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| 1659 bp
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| measured size
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Cloning of OmpR*
Digestion
Determination of the concentration of DNA
We used the biophotometer
- 5 µL of template DNA or 5 µL of EB buffer for th blank
- 55 µL of pure water
| Template DNA
| Concentration of DNA
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| PCR 147
| 150 µg/mL
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| PCR 148
| 101 µg/mL
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| MP 101.2
| 353 µg/mL
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Name of the digestions
| Name of the digestion
| Template DNA
| What's in?
| Enzymes used
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| D 188
| PCR 148
| OmpR*
| XbaI-PstI
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| D 189
| MP 101.2
| pSB1A2
| XbaI-PstI
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Protocol of digestion
- D 188 : 3 µL of PCR 148
- D 189 : 3 µL of MP 101.2
- 3µL Buffer (n°2) 10X
- 0.3µL BSA 100X
- 22.7 µL of pure Water
- 1 µL of each enzyme
- Incubate during about 2h30 at 37°C
- 20 minutes at 65°C
Cleaning of the digestion products
Standard protocol.
Ligation
Determination of the concentration of DNA
We used the biophotometer
- 10 µL of template DNA or 10 µL of EB buffer for th blank
- 50 µL of pure water
| Template DNA
| Concentration of DNA
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| D 188
| 9 µg/mL
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| D 189
| 30 µg/mL
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Protocol of ligation L171
- 2 µL Ligase Buffer 10X
- 1.5 µL D 189 (vector)
- 5 µL D 188 (insert)
- 11.5 µL pure Water (qsp 20 µL)
- 1 µL T4 DNA ligase at 400 000 U/mL concentration
- O/N at 16°C
Checking mutagenesis FliA
 EcorI/PstI digestion of mutated FliA For this, i digested mutated FliA and non-mutated FliA with EcoRI and PstI and put in migration the digestion products running on gels.
Results : No digestion for the mutated sequence --> successful mission !
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